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AF448724.1__AAL49619.1__X__00083

Bact-Vir

AF448724.1__AAL49619.1__X__00083

Identity

Accession:
AF448724 ↗
Kingdom:
phage

Quality

53.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-54_95-155
PDB
D2 high residues 173-230
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.82 66.0 5.27e-01 100.0% 45.9%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 70.0 4.52e-01 100.0% 22.9%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.80 69.0 6.45e-01 100.0% 76.1%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 69.0 6.32e-01 100.0% 74.0%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 63.0 5.69e-01 100.0% 65.4%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.77 70.0 5.56e-01 100.0% 59.5%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.77 65.0 5.47e-01 100.0% 56.8%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.76 70.0 6.02e-01 98.3% 67.1%
7metA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.76 70.0 4.29e-01 100.0% 18.8%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 66.0 6.43e-01 94.8% 93.7%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 64.0 6.46e-01 100.0% 94.8%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 64.0 6.24e-01 100.0% 85.9%
2uxwA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.74 67.0 4.62e-01 100.0% 31.7%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 59.0 6.02e-01 100.0% 92.9%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.73 67.0 5.49e-01 100.0% 75.2%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.73 65.0 5.56e-01 96.6% 100.0%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 66.0 6.26e-01 100.0% 97.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.72 59.0 5.88e-01 96.6% 86.9%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 64.0 5.88e-01 100.0% 89.3%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.71 63.0 4.66e-01 100.0% 38.9%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.71 55.0 4.69e-01 84.5% 51.6%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.71 63.0 4.10e-01 100.0% 24.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 63.0 5.37e-01 100.0% 75.0%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 63.0 5.14e-01 100.0% 95.2%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.70 62.0 4.60e-01 100.0% 39.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 63.0 5.12e-01 100.0% 58.5%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 56.0 5.83e-01 87.9% 100.0%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 60.0 4.82e-01 100.0% 60.2%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 60.0 4.19e-01 100.0% 30.6%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 55.0 5.27e-01 100.0% 79.1%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.67 58.0 5.19e-01 100.0% 70.6%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 55.0 5.48e-01 96.6% 91.9%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 55.0 4.83e-01 98.3% 100.0%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.66 56.0 4.60e-01 100.0% 51.8%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.66 56.0 5.55e-01 96.6% 100.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.66 57.0 5.17e-01 100.0% 87.8%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 54.0 4.16e-01 100.0% 98.7%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.64 55.0 3.44e-01 100.0% 19.9%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.63 49.0 3.73e-01 86.2% 39.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.63 53.0 4.10e-01 100.0% 50.3%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.63 53.0 4.08e-01 100.0% 39.7%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 56.0 3.61e-01 100.0% 32.8%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 53.0 4.92e-01 100.0% 78.9%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.62 47.0 4.44e-01 86.2% 68.1%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 52.0 4.42e-01 96.6% 68.4%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 51.0 5.11e-01 100.0% 93.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 52.0 5.22e-01 100.0% 100.0%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.61 45.0 3.59e-01 79.3% 41.7%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.60 49.0 4.40e-01 94.8% 63.5%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.59 50.0 4.46e-01 100.0% 65.9%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.59 41.0 4.23e-01 86.2% 75.4%
4nphA02 1.20.1270.330 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 47.0 4.34e-01 91.4% 95.9%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.56 47.0 4.35e-01 98.3% 75.3%
1d0xA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.56 48.0 3.73e-01 100.0% 92.7%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.18e-01 98.3% 65.2%
1w36B03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 2.95e-01 100.0% 18.4%
3hl8A03 1.20.1280.70 Mainly Alpha › Up-down Bundle › Monooxygenase › Exonuclease ExoI, domain 3 0.55 32.0 3.22e-01 75.9% 50.0%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 43.0 3.25e-01 91.4% 96.2%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 44.0 3.84e-01 100.0% 91.0%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.53 40.0 3.56e-01 89.7% 53.3%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.99e-01 89.7% 90.5%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 43.0 3.36e-01 91.4% 66.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3692208 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.84 65.0 4.08e-01 100.0% 17.1%
3906467 1008.1.1.106 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C 0.83 68.0 5.81e-01 100.0% 56.7%
3997722 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 71.0 4.61e-01 100.0% 24.6%
3979426 1.1.7.106 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25881 0.78 60.0 4.60e-01 100.0% 37.7%
4950970 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 72.0 4.26e-01 100.0% 15.3%
4457710 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 70.0 5.37e-01 100.0% 74.2%
3619575 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.76 65.0 5.84e-01 100.0% 68.8%
3778747 3755.3.1.19 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CCDC144C 0.75 59.0 3.60e-01 100.0% 13.8%
3410018 603.1.1.104 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.74 64.0 3.86e-01 100.0% 14.9%
4660622 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.73 66.0 4.26e-01 100.0% 23.7%
3389783 5030.1.1.0 extended segments › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL › Photosystem II reaction center protein L, PsbL 0.73 66.0 5.39e-01 100.0% 56.2%
3398015 603.1.1.104 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.73 64.0 3.82e-01 100.0% 15.0%
3277563 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.73 62.0 4.76e-01 100.0% 42.3%
3391391 4177.1.1.16 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.73 63.0 3.93e-01 100.0% 18.5%
3963134 605.4.1.4 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.71 64.0 5.23e-01 100.0% 62.9%
4821450 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.71 52.0 5.25e-01 79.3% 81.4%
3851039 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.71 64.0 4.91e-01 100.0% 47.2%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 63.0 4.90e-01 100.0% 47.5%
4880296 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.70 62.0 5.41e-01 100.0% 71.3%
4981980 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 62.0 4.89e-01 98.3% 100.0%
4076285 3755.1.1.12 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.69 61.0 4.61e-01 100.0% 74.3%
4210642 3755.1.1.12 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.69 61.0 4.71e-01 100.0% 63.1%
3614055 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.69 59.0 4.00e-01 100.0% 26.2%
3946654 517.2.1.0 beta barrels › CBF-like › TraF › TraF 0.69 57.0 3.71e-01 100.0% 20.0%
4489485 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 58.0 4.06e-01 100.0% 30.3%
4944680 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 58.0 3.24e-01 98.3% 50.4%
3582590 3291.1.1.9 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 0.66 55.0 4.31e-01 91.4% 77.5%
3277618 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 58.0 5.36e-01 100.0% 77.3%
3408042 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 58.0 3.53e-01 100.0% 15.7%
3274487 605.1.1.155 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.66 56.0 3.97e-01 96.6% 33.1%
3517171 604.8.1.3 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 0.64 55.0 3.80e-01 100.0% 55.2%
3644022 6055.1.1.3 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Utp11 0.64 55.0 4.60e-01 100.0% 56.2%
3965571 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 54.0 4.96e-01 100.0% 73.8%
3947823 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.64 54.0 4.39e-01 100.0% 50.0%
4009520 1.1.7.98 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25876 0.64 54.0 5.08e-01 100.0% 80.0%
4782097 5001.1.1.6 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.63 52.0 5.02e-01 100.0% 79.7%
3231463 632.8.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.63 54.0 4.67e-01 100.0% 61.1%
3283935 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.62 52.0 3.87e-01 100.0% 35.2%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 51.0 4.83e-01 100.0% 96.0%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.61 51.0 4.52e-01 100.0% 66.7%
3739343 604.1.1.3 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MAP65_ASE1 0.60 54.0 4.42e-01 100.0% 60.0%
3929962 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.57 46.0 3.16e-01 100.0% 33.7%
3212403 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.57 48.0 3.16e-01 100.0% 21.6%
3479867 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.57 47.0 3.21e-01 100.0% 38.6%
4977825 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 2.68e-01 94.8% 9.9%