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AF480611.3__AAL87214.1__X__00003

Bact-Vir

AF480611.3__AAL87214.1__X__00003

Identity

Accession:
AF480611 ↗
Kingdom:
phage

Quality

94.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1

TaxID: 187944

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-55
PDB
Domain cluster: rep: NC_016567.1__YP_004957501.1__VPEG_00008__00008__D55-117
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.88 55.0 3.52e-01 72.7% 15.6%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.88 63.0 4.94e-01 96.4% 39.4%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.82 57.0 5.76e-01 78.2% 72.7%
3w0oA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.81 64.0 4.14e-01 83.6% 88.0%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.81 58.0 4.73e-01 74.5% 52.2%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 56.0 5.63e-01 78.2% 72.7%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.78 67.0 5.14e-01 100.0% 44.0%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.73 61.0 4.88e-01 89.1% 87.1%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.73 63.0 4.71e-01 98.2% 40.5%
4b0zA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.73 58.0 3.82e-01 87.3% 25.1%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.72 64.0 4.85e-01 100.0% 82.0%
2xgjA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.72 64.0 4.19e-01 96.4% 63.3%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 57.0 4.19e-01 85.5% 73.3%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.70 63.0 5.18e-01 98.2% 69.1%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.70 60.0 5.17e-01 92.7% 72.0%
1dd3A01 1.20.5.710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.68 53.0 5.27e-01 87.3% 86.0%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 62.0 5.31e-01 100.0% 80.7%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.64 59.0 4.57e-01 100.0% 64.6%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.61 54.0 4.24e-01 100.0% 70.7%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.61 49.0 4.05e-01 100.0% 80.2%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.58 40.0 3.31e-01 78.2% 65.5%
4tkrA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.53 45.0 3.25e-01 100.0% 51.9%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 44.0 3.44e-01 100.0% 49.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4646206 192.11.1.1 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.84 61.0 4.66e-01 76.4% 54.8%
3826508 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.82 60.0 5.65e-01 76.4% 73.8%
5081307 159.1.2.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH 0.80 55.0 4.53e-01 70.9% 49.5%
3851149 5.1.5.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz 0.79 61.0 5.95e-01 89.1% 75.0%
4582542 192.11.1.1 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.79 67.0 6.35e-01 90.9% 95.2%
3588868 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 60.0 4.57e-01 81.8% 46.7%
3738041 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.78 56.0 4.80e-01 76.4% 88.2%
3804966 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.76 66.0 4.31e-01 92.7% 61.4%
3548125 3930.1.1.2 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RIG-I_C 0.76 65.0 4.86e-01 100.0% 39.2%
5051215 192.11.1.1 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.75 68.0 6.04e-01 98.2% 78.7%
3964256 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.74 54.0 3.60e-01 78.2% 25.2%
5050536 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 60.0 5.47e-01 87.3% 72.9%
3682681 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.73 65.0 3.71e-01 94.5% 12.6%
4480143 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.73 66.0 5.18e-01 100.0% 60.0%
3209663 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.72 64.0 5.44e-01 94.5% 78.8%
3286574 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 63.0 3.90e-01 94.5% 19.3%
3621367 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 59.0 3.52e-01 87.3% 13.2%
4081660 109.4.1.1457 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27772 0.71 57.0 3.56e-01 87.3% 17.1%
1885524 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.71 58.0 3.64e-01 89.1% 22.1%
3453029 611.7.1.16 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › PUB2_N 0.71 61.0 4.02e-01 92.7% 57.6%
3721491 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.71 63.0 4.45e-01 94.5% 61.3%
3244475 4156.1.1.3 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DSHCT 0.70 61.0 4.34e-01 96.4% 85.0%
3271711 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.70 60.0 4.45e-01 96.4% 40.7%
3690593 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.69 62.0 4.70e-01 96.4% 45.8%
3494417 109.4.1.363 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25 0.66 56.0 3.35e-01 92.7% 23.5%
3599328 616.1.1.6 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Mpo1-like 0.53 47.0 4.00e-01 100.0% 97.8%