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AJ131519.1__CAB52504.1__X__00026
Bact-VirAJ131519.1__CAB52504.1__X__00026
Identity
- Accession:
- AJ131519 ↗
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
D2
high
residues 96-206
Domain cluster:
rep: EU399241.1__ABY90398.1__HAPgp30__00030__D90-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17400.8 best | DUF5406 | 112.5 | 1.80e-32 | 99.1% | 95.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 37.0 | 4.63e-01 | 82.0% | 81.2% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.71 | 31.0 | 4.00e-01 | 77.5% | 70.1% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 29.0 | 4.14e-01 | 76.6% | 89.8% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.62 | 26.0 | 3.92e-01 | 73.0% | 95.5% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 31.0 | 3.81e-01 | 80.2% | 80.3% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.58 | 33.0 | 3.39e-01 | 79.3% | 57.4% |
| 2l2fA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.57 | 32.0 | 3.31e-01 | 78.4% | 56.5% |
| 4ak1A02 | 2.30.30.1270 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 27.0 | 3.40e-01 | 73.0% | 76.6% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.53 | 46.0 | 4.48e-01 | 95.5% | 95.2% |
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.51 | 37.0 | 2.78e-01 | 75.7% | 87.2% |
| 3bgyA00 | 3.20.100.10 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like | 0.50 | 41.0 | 3.33e-01 | 91.0% | 48.2% |
| 1o5yA00 | 3.10.690.10 | Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain | 0.50 | 34.0 | 3.21e-01 | 71.2% | 79.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932880 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.72 | 31.0 | 3.41e-01 | 75.7% | 48.9% |
| 3626321 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.71 | 34.0 | 4.68e-01 | 76.6% | 92.7% |
| 3527704 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.66 | 35.0 | 3.60e-01 | 80.2% | 52.7% |
| 4989633 | 3891.1.1.0 ↗ | a+b two layers › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a | 0.65 | 31.0 | 3.63e-01 | 72.1% | 63.7% |
| 4087213 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.62 | 33.0 | 3.91e-01 | 80.2% | 76.0% |
| 3980078 | 274.1.1.24 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC | 0.59 | 31.0 | 3.86e-01 | 70.3% | 81.4% |
| 3898503 | 11.1.6.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND | 0.59 | 35.0 | 3.27e-01 | 95.5% | 45.9% |
| 4968862 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 26.0 | 3.82e-01 | 70.3% | 100.0% |
| 3711062 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 41.0 | 4.32e-01 | 73.0% | 99.0% |
| 3328840 | 284.1.2.0 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases | 0.58 | 33.0 | 3.70e-01 | 74.8% | 72.9% |
| 3514912 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.57 | 33.0 | 3.98e-01 | 76.6% | 85.3% |
| 5064060 | 896.1.1.4 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 | 0.57 | 31.0 | 3.74e-01 | 80.2% | 82.9% |
| 5028935 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 28.0 | 3.40e-01 | 75.7% | 72.9% |
| 180375 | 705.1.1.1 ↗ | beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH | 0.57 | 32.0 | 3.31e-01 | 78.4% | 56.5% |
| 5010618 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 29.0 | 3.75e-01 | 74.8% | 88.9% |
| 4534466 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.55 | 33.0 | 3.57e-01 | 77.5% | 69.5% |
| 3593551 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 31.0 | 3.32e-01 | 81.1% | 63.0% |
| 4103142 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.55 | 33.0 | 3.87e-01 | 79.3% | 85.0% |
| 4929364 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.54 | 30.0 | 3.83e-01 | 80.2% | 93.8% |
| 1141950 | 3449.1.1.1 ↗ | a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like | 0.54 | 35.0 | 2.98e-01 | 82.0% | 41.7% |
| 3912181 | 2004.1.1.174 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 | 0.53 | 40.0 | 3.17e-01 | 77.5% | 93.6% |
| 4545659 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 31.0 | 3.62e-01 | 79.3% | 85.3% |
| 3628462 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 27.0 | 3.39e-01 | 73.0% | 86.7% |
| 3707461 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.52 | 37.0 | 3.44e-01 | 72.1% | 77.8% |
| 3973947 | 3454.1.1.0 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like | 0.51 | 30.0 | 3.61e-01 | 80.2% | 90.0% |
| 4464658 | 274.1.1.59 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG | 0.51 | 36.0 | 3.60e-01 | 73.9% | 70.2% |
| 3981113 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.51 | 35.0 | 3.62e-01 | 71.2% | 87.2% |
| 3784708 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.51 | 34.0 | 3.82e-01 | 76.6% | 88.2% |
| 5046188 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 33.0 | 3.92e-01 | 75.7% | 97.3% |
| 3606892 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.51 | 36.0 | 3.51e-01 | 73.9% | 82.4% |
| 3714422 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 40.0 | 3.17e-01 | 85.6% | 78.3% |