←Back to structures

AJ242593.1__CAB53825.1__X__00039

Bact-Vir

AJ242593.1__CAB53825.1__X__00039

Identity

Accession:
AJ242593 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_A118

TaxID: 40521

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00359__D2-57
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.76 62.0 5.49e-01 88.1% 80.0%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 52.0 3.73e-01 79.1% 99.5%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 52.0 3.67e-01 77.6% 61.4%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 52.0 3.64e-01 79.1% 55.5%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.69 50.0 3.63e-01 79.1% 100.0%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 51.0 3.62e-01 80.6% 97.6%
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 55.0 3.90e-01 89.6% 54.5%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.67 49.0 4.68e-01 77.6% 78.5%
1qtqA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.67 55.0 4.75e-01 91.0% 90.7%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.67 49.0 3.47e-01 79.1% 99.1%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.66 49.0 3.37e-01 79.1% 41.4%
2d3aA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.65 55.0 4.85e-01 95.5% 81.2%
2hz7A05 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.65 56.0 4.56e-01 97.0% 90.6%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 52.0 4.18e-01 89.6% 63.7%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.64 45.0 3.27e-01 76.1% 99.5%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 46.0 3.35e-01 79.1% 58.8%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 49.0 4.43e-01 86.6% 74.5%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 47.0 3.47e-01 83.6% 63.4%
3ng0A01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.61 51.0 4.54e-01 97.0% 81.6%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 49.0 4.01e-01 89.6% 62.6%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.60 41.0 3.65e-01 71.6% 83.2%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.60 50.0 4.40e-01 97.0% 79.2%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 48.0 4.05e-01 89.6% 59.8%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 44.0 4.73e-01 98.5% 96.4%
5ah5A01 3.10.20.590 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 46.0 4.85e-01 85.1% 98.4%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 45.0 3.85e-01 80.6% 59.2%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.58 42.0 3.83e-01 80.6% 57.1%
1aqtA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.57 47.0 4.34e-01 94.0% 97.7%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.56 41.0 3.02e-01 82.1% 95.8%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 42.0 3.39e-01 86.6% 97.3%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.54 44.0 3.79e-01 88.1% 67.3%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 41.0 3.23e-01 88.1% 98.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 47.0 4.47e-01 100.0% 98.7%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.25e-01 100.0% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.51e-01 74.6% 72.7%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 44.0 3.73e-01 97.0% 82.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4097972 239.2.1.1 ↗ beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.76 62.0 5.14e-01 88.1% 66.1%
4947178 239.2.1.1 ↗ beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.76 62.0 4.93e-01 88.1% 58.5%
4947785 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.74 61.0 6.11e-01 89.6% 88.4%
3926950 4.1.1.214 ↗ beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.72 51.0 4.21e-01 74.6% 52.5%
4157545 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.70 50.0 3.87e-01 76.1% 66.7%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.42e-01 73.1% 83.3%
157262 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.69 52.0 3.68e-01 80.6% 97.1%
3592004 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.69 59.0 4.98e-01 94.0% 90.0%
3356712 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 5.29e-01 88.1% 97.8%
3329019 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 43.0 4.87e-01 89.6% 86.0%
4192882 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.68 56.0 4.80e-01 89.6% 91.4%
5042402 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.68 54.0 5.64e-01 85.1% 98.3%
4352516 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.68 59.0 4.94e-01 97.0% 91.3%
1687631 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.68 55.0 3.86e-01 89.6% 52.0%
3249895 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 47.0 4.65e-01 91.0% 68.6%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 45.0 3.16e-01 70.1% 35.3%
4084964 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.67 58.0 4.83e-01 98.5% 87.5%
3946849 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 47.0 5.30e-01 83.6% 100.0%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 47.0 4.23e-01 73.1% 76.7%
7442 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.67 49.0 3.47e-01 79.1% 99.1%
1513036 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.67 58.0 5.04e-01 98.5% 86.7%
2547952 237.1.1.34 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART, ADPrib_exo_Tox 0.66 49.0 3.37e-01 79.1% 41.4%
3791752 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.48e-01 88.1% 70.8%
4023972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 51.0 4.40e-01 85.1% 62.9%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 45.0 4.21e-01 73.1% 90.6%
3926921 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 55.0 4.15e-01 98.5% 55.7%
4654417 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.64 55.0 4.93e-01 100.0% 88.0%
3625963 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 45.0 3.98e-01 73.1% 81.1%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.63 51.0 4.21e-01 88.1% 59.2%
2756306 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 43.0 3.68e-01 70.1% 88.3%
3886084 237.1.1.2 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.62 52.0 3.57e-01 91.0% 97.8%
4949489 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 46.0 4.31e-01 80.6% 64.7%
4424922 237.1.1.34 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART, ADPrib_exo_Tox 0.61 50.0 3.49e-01 91.0% 97.4%
4952364 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.59 49.0 4.59e-01 94.0% 78.8%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.59 49.0 4.20e-01 92.5% 81.8%
308110 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.59 42.0 3.04e-01 77.6% 95.4%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.58 40.0 3.43e-01 73.1% 93.6%
3340613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.45e-01 89.6% 92.5%
4645759 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.57 45.0 3.30e-01 89.6% 83.6%
3847353 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.56 49.0 4.15e-01 95.5% 85.5%
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.61e-01 92.5% 88.6%
3923769 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 45.0 4.22e-01 91.0% 92.5%
4852063 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.44e-01 77.6% 80.2%
3252916 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.53 47.0 4.12e-01 98.5% 88.0%
4459066 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.52 45.0 3.55e-01 95.5% 65.7%
4184649 3124.1.1.1 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.51 38.0 3.95e-01 82.1% 98.3%
3462995 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.50 39.0 3.04e-01 89.6% 55.3%