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AJ278322.4__CAB93909.2__X__00004
Bact-VirAJ278322.4__CAB93909.2__X__00004
Identity
- Accession:
- AJ278322 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
TaxID: 28358
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-79
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22740.2 best | PapZ_C | 31.1 | 3.30e-07 | 100.0% | 37.2% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bguA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.71 | 52.0 | 4.29e-01 | 97.4% | 43.0% |
| 1d2kA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 44.0 | 2.88e-01 | 100.0% | 16.1% |
| 3inpA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 45.0 | 3.28e-01 | 92.3% | 25.7% |
| 3co5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 40.0 | 3.41e-01 | 100.0% | 37.3% |
| 2afrA00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.62 | 45.0 | 3.35e-01 | 78.2% | 83.8% |
| 4nesA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.62 | 44.0 | 3.53e-01 | 97.4% | 36.2% |
| 2vhaA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 40.0 | 3.11e-01 | 74.4% | 28.9% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 41.0 | 2.93e-01 | 74.4% | 98.4% |
| 2yv4A00 | 3.40.50.11030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain | 0.56 | 40.0 | 3.75e-01 | 93.6% | 58.8% |
| 3mixA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.55 | 38.0 | 3.31e-01 | 73.1% | 68.3% |
| 2a35A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 3.28e-01 | 97.4% | 34.1% |
| 2zdsB00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 45.0 | 3.06e-01 | 97.4% | 23.6% |
| 1b4uB00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.52 | 45.0 | 3.06e-01 | 97.4% | 76.2% |
| 3menB00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.52 | 44.0 | 2.97e-01 | 100.0% | 52.3% |
| 3hskA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.44e-01 | 97.4% | 45.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4064123 | 7572.1.1.2 ↗ | a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PapZ_C | 0.86 | 80.0 | 6.62e-01 | 100.0% | 69.2% |
| 3304947 | 2003.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N | 0.77 | 53.0 | 4.84e-01 | 98.7% | 55.0% |
| 3781553 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.74 | 43.0 | 2.87e-01 | 93.6% | 15.3% |
| 3386587 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.71 | 54.0 | 4.02e-01 | 82.1% | 94.9% |
| 3220927 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.67 | 61.0 | 4.48e-01 | 98.7% | 43.1% |
| 3733903 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.65 | 56.0 | 3.80e-01 | 100.0% | 25.9% |
| 3187985 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.64 | 50.0 | 3.47e-01 | 100.0% | 24.4% |
| 3480122 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.64 | 57.0 | 4.74e-01 | 98.7% | 63.0% |
| 3694573 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.63 | 54.0 | 3.69e-01 | 100.0% | 25.9% |
| 5076938 | 2485.1.1.38 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 | 0.63 | 38.0 | 3.55e-01 | 79.5% | 49.5% |
| 3610780 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.62 | 55.0 | 4.19e-01 | 97.4% | 63.3% |
| 5043933 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.62 | 49.0 | 3.23e-01 | 94.9% | 20.0% |
| 4945309 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.61 | 53.0 | 4.48e-01 | 97.4% | 72.3% |
| 3993467 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.57 | 51.0 | 3.48e-01 | 100.0% | 29.3% |
| 3166037 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 41.0 | 3.27e-01 | 79.5% | 89.3% |
| 3717618 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 37.0 | 3.09e-01 | 78.2% | 40.0% |
| 5022773 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.54 | 48.0 | 4.23e-01 | 100.0% | 76.5% |
| None | — | 0.53 | 47.0 | 4.30e-01 | 100.0% | 95.1% | |
| 5081683 | 2002.3.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 | 0.53 | 45.0 | 2.86e-01 | 98.7% | 29.1% |
| 4983940 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 38.0 | 3.24e-01 | 78.2% | 54.1% |
| 5030784 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.52 | 46.0 | 3.15e-01 | 100.0% | 46.8% |
| 4490823 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.52 | 45.0 | 3.50e-01 | 98.7% | 49.1% |
| 3608577 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 44.0 | 3.03e-01 | 96.2% | 34.3% |
| 1253210 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.51 | 35.0 | 3.07e-01 | 82.1% | 46.7% |