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AJ278322.4__CAB93928.2__X__00024

Bact-Vir

AJ278322.4__CAB93928.2__X__00024

Identity

Accession:
AJ278322 ↗
Kingdom:
phage

Quality

66.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sasvirus› Corynebacterium_phage_BFK20

TaxID: 28358

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-60
PDB
Domain cluster: rep: OM818331.1__UOK18351.1__SEA_BRUHMOMENT_35__00035__D131-183
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.80 63.0 6.01e-01 100.0% 72.7%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.77 60.0 6.17e-01 100.0% 93.0%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.69 52.0 5.12e-01 100.0% 78.4%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.66 56.0 5.09e-01 100.0% 87.7%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 55.0 4.22e-01 100.0% 39.5%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 55.0 4.41e-01 100.0% 49.0%
1i2dA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.65 56.0 3.74e-01 100.0% 68.6%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 54.0 4.24e-01 100.0% 43.5%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 56.0 3.57e-01 100.0% 21.4%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.64 56.0 3.70e-01 100.0% 54.6%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 54.0 4.26e-01 100.0% 44.2%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 53.0 4.22e-01 100.0% 57.5%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 3.55e-01 100.0% 21.6%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.64 53.0 3.87e-01 100.0% 89.4%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.62 51.0 3.75e-01 100.0% 88.6%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 51.0 3.65e-01 100.0% 35.3%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.61 51.0 3.64e-01 100.0% 41.8%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 45.0 4.50e-01 82.6% 81.2%
4zo2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 50.0 3.09e-01 100.0% 24.6%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 49.0 4.51e-01 100.0% 92.4%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 46.0 4.29e-01 100.0% 90.9%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 47.0 3.24e-01 100.0% 48.1%
2j5vA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 48.0 3.92e-01 100.0% 92.6%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.12e-01 100.0% 25.4%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 45.0 3.30e-01 100.0% 44.5%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.36e-01 97.8% 47.2%
7xlqD02 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.54 42.0 2.96e-01 95.7% 34.7%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 37.0 2.21e-01 73.9% 84.4%
7c2xA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 39.0 2.46e-01 80.4% 14.5%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 40.0 3.08e-01 100.0% 31.1%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 46.0 3.50e-01 100.0% 85.0%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.53 41.0 3.10e-01 93.5% 44.9%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.52 42.0 3.89e-01 100.0% 81.5%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.52 41.0 3.83e-01 100.0% 89.4%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 2.85e-01 100.0% 22.8%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 38.0 3.58e-01 100.0% 88.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030628 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 54.0 3.10e-01 100.0% 7.8%
3875076 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 59.0 4.18e-01 100.0% 34.5%
3535755 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.68 58.0 4.15e-01 100.0% 35.7%
4433128 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.66 56.0 4.54e-01 100.0% 96.8%
3964956 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.66 58.0 3.72e-01 100.0% 22.5%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.31e-01 78.3% 57.8%
3960643 101.1.2.862 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26090 0.66 50.0 3.27e-01 84.8% 20.5%
3517650 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.66 53.0 4.27e-01 100.0% 44.0%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.66 55.0 4.08e-01 100.0% 36.9%
3459983 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 50.0 2.98e-01 97.8% 10.1%
3499785 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 51.0 3.00e-01 97.8% 10.4%
3928322 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 54.0 4.23e-01 100.0% 45.7%
3579037 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 55.0 4.27e-01 100.0% 44.8%
3905730 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 53.0 4.05e-01 100.0% 39.1%
3958547 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 55.0 4.96e-01 100.0% 83.1%
3937472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 52.0 4.08e-01 100.0% 41.9%
4104106 1.1.9.16 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.64 54.0 3.71e-01 100.0% 78.3%
3934183 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.63 53.0 4.17e-01 100.0% 44.8%
3583928 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 52.0 4.14e-01 100.0% 43.8%
4934245 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 53.0 3.71e-01 100.0% 56.9%
3218512 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 51.0 4.10e-01 100.0% 55.2%
4128879 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 53.0 4.26e-01 100.0% 96.8%
4344650 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 52.0 4.17e-01 100.0% 95.0%
3580278 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 51.0 3.85e-01 100.0% 44.0%
4065495 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 51.0 4.10e-01 100.0% 92.0%
4123274 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.62 48.0 4.56e-01 89.1% 72.7%
4003762 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.61 52.0 3.63e-01 100.0% 40.6%
4597893 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.61 50.0 4.06e-01 100.0% 93.0%
4062422 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 50.0 4.09e-01 100.0% 96.8%
4323001 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 49.0 4.00e-01 100.0% 95.0%
169 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.59 49.0 4.51e-01 100.0% 92.4%
4601397 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 49.0 3.98e-01 100.0% 96.8%
3964275 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 47.0 3.94e-01 100.0% 96.8%
5081359 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.58 48.0 3.38e-01 100.0% 32.4%
4993841 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.58 47.0 3.53e-01 100.0% 39.6%
4030408 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.58 48.0 3.15e-01 100.0% 21.4%
1772519 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.54 41.0 2.77e-01 100.0% 19.1%
2083983 269.1.1.2 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.53 40.0 2.61e-01 100.0% 15.8%
3984429 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 42.0 3.71e-01 91.3% 80.0%
3435756 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 38.0 2.41e-01 80.4% 14.5%
2084081 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.51 38.0 2.47e-01 100.0% 14.6%
D2 high residues 184-259
PDB
D3 medium residues 301-358
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.70 47.0 4.85e-01 72.4% 74.5%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.67 52.0 3.56e-01 84.5% 32.9%
3ssmC02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 43.0 2.98e-01 70.7% 79.6%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.61 41.0 2.99e-01 72.4% 25.8%
2x5kP02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 35.0 2.65e-01 72.4% 29.7%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.50 41.0 2.75e-01 98.3% 73.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995752 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.57 39.0 2.88e-01 74.1% 24.8%
3788501 3866.1.1.2 ↗ extended segments › Mitochondrial 54S ribosomal protein L25 › Mitochondrial 54S ribosomal protein L25 › Mitochondrial 54S ribosomal protein L25 › Mitoc_mL59 0.57 37.0 2.77e-01 98.3% 26.0%
3468880 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 32.0 1.98e-01 81.0% 8.9%
4126405 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.55 43.0 3.75e-01 93.1% 100.0%
4985335 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.53 39.0 2.67e-01 81.0% 48.5%
3709804 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.53 36.0 2.94e-01 74.1% 66.4%
4997643 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 36.0 2.56e-01 75.9% 71.0%
3390173 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.52 39.0 2.50e-01 89.7% 75.9%
4945353 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 36.0 2.67e-01 74.1% 90.0%
3928227 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.51 34.0 2.89e-01 72.4% 51.8%
4084360 298.1.1.7 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Gp_dh_C 0.50 34.0 2.41e-01 72.4% 23.2%