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AJ278707.1__CAC19020.1__X__00001

Bact-Vir

AJ278707.1__CAC19020.1__X__00001

Identity

Accession:
AJ278707 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Neisseria_meningitidis_phage_2120

TaxID: 132905

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-112
PDB
Domain cluster: rep: OQ067477.1__WCD44161.1__Lumi_022__00022__D8-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05100.18 best Phage_tail_L 134.7 4.00e-39 100.0% 51.0%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 43.0 4.29e-01 93.4% 61.3%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 44.0 4.24e-01 92.5% 59.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 44.0 4.68e-01 93.4% 78.5%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.63 35.0 3.66e-01 92.5% 58.3%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 3.90e-01 91.5% 60.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.62 45.0 5.10e-01 100.0% 100.0%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 4.21e-01 91.5% 76.7%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 37.0 4.12e-01 93.4% 77.1%
1ao7B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 3.85e-01 91.5% 66.0%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 3.83e-01 91.5% 64.8%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 3.79e-01 75.5% 62.4%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 41.0 3.93e-01 92.5% 62.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 4.21e-01 93.4% 73.7%
1a6aB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.75e-01 91.5% 68.4%
3plsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 38.0 3.88e-01 92.5% 69.2%
6a2bB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 35.0 3.71e-01 91.5% 70.2%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.60e-01 89.6% 67.4%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 47.0 4.12e-01 95.3% 66.5%
5lt5A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.53 37.0 3.79e-01 91.5% 74.5%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 48.0 3.91e-01 100.0% 59.4%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.53 38.0 3.93e-01 93.4% 80.8%
6f7bA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 33.0 2.41e-01 92.5% 22.9%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.52 32.0 2.97e-01 90.6% 48.1%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.52 38.0 3.52e-01 91.5% 61.8%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 34.0 3.66e-01 93.4% 80.9%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 24.0 2.93e-01 91.5% 68.3%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.51 45.0 4.03e-01 100.0% 84.0%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.51 37.0 3.44e-01 93.4% 60.0%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.39e-01 91.5% 66.4%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 3.40e-01 91.5% 62.1%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 32.0 2.98e-01 95.3% 49.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504737 1.1.13.54 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.99 95.0 8.45e-01 100.0% 75.0%
3949305 1.1.13.54 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.96 92.0 8.10e-01 100.0% 73.1%
4602833 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 67.0 6.12e-01 100.0% 74.8%
3267872 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 48.0 4.51e-01 93.4% 55.4%
3501754 1.1.13.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.67 41.0 4.20e-01 95.3% 62.9%
3830759 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.67 44.0 4.42e-01 91.5% 65.5%
4318415 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 40.0 4.20e-01 92.5% 66.3%
4214150 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 40.0 4.00e-01 95.3% 58.2%
4316037 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 40.0 4.03e-01 93.4% 59.1%
2989727 1.1.13.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.64 45.0 4.51e-01 97.2% 70.8%
3741028 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.63 45.0 4.53e-01 95.3% 74.3%
4667615 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 38.0 3.60e-01 91.5% 52.0%
3724709 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.62 55.0 4.74e-01 100.0% 81.8%
3307398 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.61 38.0 3.78e-01 90.6% 59.1%
3165720 1.1.7.13 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.61 53.0 4.62e-01 96.2% 75.0%
3788348 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.61 48.0 4.67e-01 95.3% 76.5%
4255584 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 41.0 4.19e-01 97.2% 72.0%
3485648 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.59 53.0 4.47e-01 100.0% 81.7%
3899014 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 44.0 3.40e-01 100.0% 37.3%
3950275 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 36.0 3.94e-01 92.5% 77.6%
4225320 306.3.1.4 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.57 34.0 3.41e-01 91.5% 59.0%
3517676 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 47.0 4.51e-01 95.3% 78.3%
3265120 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 48.0 4.19e-01 100.0% 79.4%
3611250 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 48.0 4.34e-01 94.3% 77.2%
3264744 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.55 48.0 4.18e-01 100.0% 80.0%
3386744 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.54 39.0 3.68e-01 93.4% 62.9%
4928514 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.72e-01 88.7% 76.7%
3628492 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.59e-01 92.5% 67.3%
3468880 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 34.0 2.38e-01 93.4% 19.7%
3187444 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.52 39.0 3.88e-01 95.3% 75.7%
184718 1.1.13.16 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_12 0.51 45.0 4.03e-01 100.0% 84.0%
3829625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.00e-01 94.3% 73.7%
4115001 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 31.0 2.98e-01 93.4% 50.0%
3286458 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 44.0 4.19e-01 100.0% 82.4%
D2 medium residues 121-194
PDB
Domain cluster: rep: OQ436456.1__WEU67278.1__X__00011__D227-304
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05100.18 best Phage_tail_L 92.6 3.00e-26 97.3% 34.9%