Back to structures

AJ298298.1__CAC83551.1__X__00033

Bact-Vir

AJ298298.1__CAC83551.1__X__00033

Identity

Accession:
AJ298298 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-107
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 6.74e-01 79.5% 98.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 6.20e-01 93.2% 81.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.78 59.0 5.87e-01 78.1% 98.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 58.0 6.10e-01 78.1% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.78 73.0 7.19e-01 100.0% 97.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 6.35e-01 93.2% 98.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 66.0 5.15e-01 95.9% 84.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.90e-01 79.5% 93.7%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 62.0 4.90e-01 91.8% 89.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 67.0 4.61e-01 100.0% 58.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 65.0 5.08e-01 100.0% 96.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.58e-01 78.1% 93.7%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.71 60.0 5.85e-01 90.4% 96.2%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 49.0 3.72e-01 72.6% 92.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.66e-01 79.5% 96.8%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 51.0 4.13e-01 78.1% 75.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.91e-01 86.3% 100.0%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 45.0 4.09e-01 74.0% 94.9%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.64 44.0 3.96e-01 74.0% 80.6%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.74e-01 79.5% 90.9%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.52e-01 72.6% 85.6%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 4.03e-01 94.5% 93.3%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 38.0 3.76e-01 71.2% 58.7%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.77e-01 79.5% 85.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 41.0 3.38e-01 74.0% 59.1%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.58 47.0 4.45e-01 94.5% 80.6%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.57 42.0 4.01e-01 79.5% 90.8%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.38e-01 79.5% 44.8%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.48e-01 72.6% 96.3%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 40.0 3.60e-01 75.3% 82.7%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 39.0 2.61e-01 71.2% 29.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.56 41.0 4.36e-01 90.4% 93.7%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.58e-01 78.1% 67.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 37.0 3.86e-01 79.5% 74.6%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.52e-01 84.9% 88.7%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 38.0 2.74e-01 72.6% 55.5%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 41.0 3.57e-01 79.5% 91.8%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.47e-01 76.7% 83.6%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 37.0 2.91e-01 71.2% 96.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 35.0 3.84e-01 71.2% 81.7%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.01e-01 98.6% 83.7%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 47.0 3.11e-01 100.0% 87.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 36.0 3.83e-01 71.2% 90.5%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.52 44.0 3.63e-01 94.5% 81.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 39.0 3.94e-01 84.9% 80.3%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.77e-01 90.4% 94.6%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.45e-01 95.9% 88.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 70.0 7.16e-01 86.3% 82.9%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 56.0 6.67e-01 72.6% 100.0%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 61.0 6.91e-01 76.7% 100.0%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 58.0 6.57e-01 82.2% 100.0%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 53.0 6.08e-01 71.2% 90.9%
3982999 4.1.1.60 beta barrels › SH3 › SH3 › SH3 › YccV-like 0.79 74.0 6.52e-01 98.6% 93.0%
3650296 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.79 64.0 5.83e-01 86.3% 82.1%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 61.0 6.26e-01 94.5% 87.1%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 58.0 6.11e-01 80.8% 93.8%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 60.0 5.94e-01 83.6% 92.0%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 61.0 6.48e-01 89.0% 96.9%
3742605 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.75 53.0 3.39e-01 74.0% 29.0%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 6.24e-01 91.8% 100.0%
3302166 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 61.0 6.44e-01 89.0% 96.9%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 58.0 6.09e-01 91.8% 92.3%
4026274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 61.0 4.86e-01 89.0% 97.9%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 55.0 5.76e-01 78.1% 90.8%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 54.0 5.76e-01 78.1% 90.8%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 54.0 5.75e-01 78.1% 90.8%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 62.0 5.00e-01 97.3% 49.6%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 6.20e-01 90.4% 93.2%
5048696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 4.50e-01 89.0% 61.8%
4101580 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 57.0 5.98e-01 93.2% 93.8%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 55.0 5.84e-01 91.8% 92.3%
3927335 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.71 50.0 3.25e-01 74.0% 30.2%
5020252 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 57.0 4.83e-01 97.3% 53.3%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.92e-01 97.3% 95.6%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.47e-01 80.8% 98.6%
3245395 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 50.0 3.18e-01 74.0% 27.7%
3265965 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 51.0 3.11e-01 76.7% 23.7%
3442506 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 51.0 3.14e-01 76.7% 26.3%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.54e-01 93.2% 87.1%
3583296 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 55.0 5.61e-01 83.6% 98.6%
3214131 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 63.0 6.15e-01 98.6% 100.0%
4003553 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.69 50.0 3.08e-01 76.7% 20.2%
3211944 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.68 51.0 3.22e-01 78.1% 24.0%
3636137 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 48.0 2.94e-01 74.0% 34.1%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.32e-01 89.0% 96.5%
3928760 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 50.0 3.20e-01 79.5% 23.9%
4020922 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.67 53.0 3.52e-01 84.9% 46.2%
3926090 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 47.0 2.92e-01 74.0% 21.9%
3532358 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 49.0 3.15e-01 78.1% 30.1%
3546727 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 56.0 4.89e-01 91.8% 75.0%
3480200 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 53.0 5.25e-01 84.9% 100.0%
3231541 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 46.0 3.06e-01 74.0% 34.0%
4086925 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 47.0 4.87e-01 78.1% 89.2%
4377781 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 55.0 5.34e-01 95.9% 92.5%
3970847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.62e-01 74.0% 92.9%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.64 53.0 4.95e-01 91.8% 91.1%
3633568 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 46.0 2.96e-01 76.7% 27.3%
3281614 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 3.95e-01 78.1% 52.4%
3991944 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.61 49.0 3.33e-01 87.7% 38.1%
3792511 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.61 49.0 3.14e-01 87.7% 29.0%
3243901 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 42.0 2.77e-01 71.2% 26.5%
4258307 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 49.0 3.29e-01 89.0% 30.7%
3236474 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 43.0 2.84e-01 76.7% 28.7%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.60 44.0 4.61e-01 75.3% 98.5%
3172156 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.60 39.0 3.54e-01 79.5% 46.7%
3178590 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.56 40.0 2.53e-01 76.7% 34.0%
4107647 243.18.1.1 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.56 40.0 3.70e-01 75.3% 80.0%
3225270 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 39.0 2.64e-01 74.0% 28.8%
3967145 223.1.1.54 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 0.54 37.0 2.57e-01 71.2% 92.9%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.79e-01 76.7% 74.3%
3214705 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.53 38.0 3.26e-01 75.3% 73.3%
3214812 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 38.0 3.54e-01 76.7% 61.7%
3806458 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 38.0 3.07e-01 75.3% 55.2%
4031151 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 43.0 4.34e-01 91.8% 100.0%
3865506 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.51 43.0 3.81e-01 95.9% 84.5%
4653150 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 35.0 3.13e-01 72.6% 64.5%
4528679 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.50 35.0 2.95e-01 74.0% 77.8%