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AJ439451.1__CAD28418.1__X__00002

Bact-Vir

AJ439451.1__CAD28418.1__X__00002

Identity

Accession:
AJ439451 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Mosigvirus› Escherichia_phage_RB69

TaxID: 12353

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-77
PDB
Domain cluster: rep: MF001355.1__ASZ76361.1__X__00075__D24-98
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gitA02 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.59 49.0 3.03e-01 94.5% 15.3%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 45.0 2.71e-01 90.9% 27.6%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 43.0 3.48e-01 87.3% 54.5%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 42.0 2.94e-01 96.4% 24.7%
2qtsA04 1.10.287.820 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Acid-sensing ion channel domain 0.54 45.0 3.97e-01 96.4% 67.9%
7pbkB02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 43.0 3.21e-01 87.3% 36.3%
1hi8A02 1.10.490.60 Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain 0.53 47.0 3.48e-01 100.0% 79.9%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.52 36.0 2.95e-01 92.7% 36.5%
2jh3A03 3.30.1360.190 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 39.0 3.22e-01 83.6% 100.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 2.85e-01 74.5% 40.0%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 42.0 3.10e-01 100.0% 34.0%
3dl1A01 1.10.472.150 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain 0.51 43.0 3.60e-01 100.0% 53.5%
1dgjA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 40.0 3.46e-01 90.9% 70.2%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.50 43.0 3.38e-01 94.5% 55.6%
2uubR00 4.10.640.10 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Ribosomal protein S18 0.50 31.0 2.84e-01 72.7% 46.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4250780 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.65 49.0 3.80e-01 83.6% 40.0%
3738977 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.63 39.0 2.57e-01 83.6% 16.2%
3296314 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.62 38.0 3.28e-01 90.9% 38.8%
4426094 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.58 49.0 4.23e-01 96.4% 60.0%
4277854 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.57 48.0 3.35e-01 94.5% 29.7%
3401125 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.57 39.0 2.29e-01 70.9% 89.9%
3166770 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.56 48.0 3.47e-01 98.2% 66.1%
4352968 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.56 46.0 3.98e-01 94.5% 57.8%
4124299 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.56 48.0 4.17e-01 100.0% 63.3%
3097180 146.1.1.0 ↗ alpha arrays › Di-copper centre-containing domain › Di-copper centre-containing domain › Di-copper centre-containing domain 0.55 45.0 2.98e-01 100.0% 67.2%
3863095 304.161.1.2 ↗ a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in TMEM16 lipid scramblase › Alpha-beta plait domain in TMEM16 lipid scramblase › Anoct_dimer 0.55 42.0 2.99e-01 83.6% 71.8%
3413548 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.54 45.0 2.68e-01 96.4% 83.7%
184723 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.53 36.0 3.12e-01 94.5% 44.9%
3238402 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.53 45.0 2.64e-01 96.4% 85.5%
3229019 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.52 43.0 2.79e-01 100.0% 32.4%
4015025 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.52 43.0 3.24e-01 98.2% 54.9%
4249486 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 46.0 3.01e-01 100.0% 77.1%
3791858 1128.1.1.3 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › UQCC2_CBP6 0.52 45.0 3.86e-01 98.2% 62.2%
4683221 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.52 42.0 2.75e-01 94.5% 32.9%
185994 6030.1.1.1 ↗ a+b two layers › Middle domain of ribosomal protein S2-related protein › Middle domain of ribosomal protein S2-related protein › Middle domain of ribosomal protein S2-related protein › DR2241 0.52 45.0 3.54e-01 100.0% 96.6%
3411847 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.50 41.0 2.49e-01 98.2% 92.2%