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AJ517766.2__CAD57144.2__X__00001
Bact-VirAJ517766.2__CAD57144.2__X__00001
Identity
- Accession:
- AJ517766 ↗
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Krischvirus›
Escherichia_phage_RB49
TaxID: 50948
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-41
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00265.25 best | TK | 25.0 | 2.20e-05 | 94.4% | 13.1% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zg9A00 | 6.20.370.110 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.66 | 28.0 | 2.71e-01 | 72.2% | 34.1% |
| 2wyhA07 | 2.60.40.2220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 42.0 | 3.50e-01 | 86.1% | 42.9% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 42.0 | 2.55e-01 | 80.6% | 61.9% |
| 4f80A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 42.0 | 3.21e-01 | 86.1% | 49.5% |
| 2zyrA02 | 2.60.40.2190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 43.0 | 3.26e-01 | 91.7% | 52.1% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 3.15e-01 | 86.1% | 52.1% |
| 4cbpB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.00e-01 | 86.1% | 44.2% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.54 | 41.0 | 2.75e-01 | 100.0% | 59.7% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 38.0 | 2.87e-01 | 86.1% | 96.7% |
| 2levA00 | 4.10.430.10 | Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain | 0.53 | 36.0 | 3.37e-01 | 83.3% | 70.2% |
| 2uxtA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 37.0 | 2.55e-01 | 94.4% | 19.3% |
| 1bq5A02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.51 | 38.0 | 2.61e-01 | 94.4% | 79.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976549 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.79 | 63.0 | 4.02e-01 | 100.0% | 17.6% |
| 4074154 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.78 | 65.0 | 6.16e-01 | 100.0% | 80.0% |
| 4007998 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.78 | 63.0 | 3.99e-01 | 100.0% | 17.6% |
| 4675823 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.77 | 63.0 | 5.37e-01 | 100.0% | 55.4% |
| 4619118 | 205.1.1.35 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 | 0.67 | 49.0 | 3.61e-01 | 88.9% | 29.6% |
| None | — | 0.67 | 50.0 | 2.98e-01 | 97.2% | 10.5% | |
| 3220394 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 44.0 | 3.45e-01 | 83.3% | 31.1% |
| 3444605 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.63 | 51.0 | 4.48e-01 | 100.0% | 73.3% |
| 3649191 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.63 | 51.0 | 4.35e-01 | 100.0% | 67.7% |
| 3184602 | 373.1.1.1 ↗ | few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn_clus | 0.61 | 43.0 | 3.45e-01 | 77.8% | 37.5% |
| 3503603 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.61 | 45.0 | 3.39e-01 | 83.3% | 48.4% |
| 4186556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 44.0 | 3.26e-01 | 91.7% | 72.7% |
| 5039313 | 3769.1.1.0 ↗ | 0.56 | 44.0 | 4.25e-01 | 100.0% | 84.4% | |
| 3924201 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.53 | 37.0 | 3.15e-01 | 75.0% | 46.9% |
| 4432935 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.52 | 36.0 | 3.07e-01 | 75.0% | 46.2% |
| 3178433 | 4329.1.1.1 ↗ | a+b complex topology › ORC1-binding domain › ORC1-binding domain › ORC1-binding domain › Sir1 | 0.52 | 38.0 | 2.88e-01 | 100.0% | 36.8% |
| 4969193 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 2.68e-01 | 91.7% | 42.9% |