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AJ564013.1__CAD91795.1__X__00035

Bact-Vir

AJ564013.1__CAD91795.1__X__00035

Identity

Accession:
AJ564013 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_PY54

TaxID: 172667

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-101
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.74 52.0 5.07e-01 86.8% 67.1%
1iamA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 54.0 4.65e-01 92.6% 52.0%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.70 46.0 4.55e-01 83.8% 63.9%
3nvqA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 46.0 4.29e-01 88.2% 57.1%
2gy5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 44.0 4.08e-01 85.3% 51.1%
2cspA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 45.0 4.02e-01 89.7% 49.0%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 41.0 3.84e-01 88.2% 50.0%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 44.0 3.94e-01 89.7% 50.5%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 4.01e-01 94.1% 54.8%
3qvaA00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.62 43.0 3.70e-01 89.7% 45.0%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.61 40.0 3.41e-01 86.8% 39.3%
5lf5A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 40.0 3.78e-01 91.2% 54.2%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 40.0 3.25e-01 88.2% 35.6%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 3.81e-01 89.7% 53.7%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 41.0 3.68e-01 89.7% 51.0%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 42.0 3.64e-01 89.7% 48.6%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 40.0 4.04e-01 85.3% 71.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 48.0 4.40e-01 100.0% 69.7%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.58 47.0 4.44e-01 88.2% 100.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 42.0 3.88e-01 89.7% 58.5%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.57 46.0 4.23e-01 88.2% 98.9%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 45.0 3.55e-01 95.6% 42.3%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 44.0 3.46e-01 91.2% 83.7%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 47.0 3.70e-01 94.1% 93.7%
2nx8A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 44.0 3.37e-01 92.6% 76.8%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.53 43.0 3.18e-01 89.7% 68.6%
1tiyA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.28e-01 88.2% 59.0%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.38e-01 88.2% 50.7%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.53 42.0 4.01e-01 86.8% 100.0%
3v0dA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.34e-01 89.7% 44.1%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.57e-01 95.6% 48.9%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.51 41.0 3.13e-01 91.2% 39.8%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.27e-01 88.2% 75.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.51 42.0 3.82e-01 94.1% 100.0%
3i7jA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 41.0 2.84e-01 94.1% 58.2%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.08e-01 85.3% 65.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599222 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.68 53.0 4.36e-01 83.8% 53.3%
3392304 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.66 53.0 4.70e-01 92.6% 59.0%
4586605 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.66 45.0 3.85e-01 72.1% 82.7%
3392309 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.63 50.0 4.48e-01 92.6% 61.0%
3997516 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.63 50.0 4.27e-01 92.6% 53.0%
3235140 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 43.0 3.89e-01 95.6% 56.8%
4961537 2492.1.1.17 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.57 47.0 3.68e-01 91.2% 87.6%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 2.41e-01 86.8% 10.5%
3990487 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 44.0 4.13e-01 91.2% 68.2%
4386779 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.56 43.0 2.75e-01 95.6% 15.7%
3821185 109.4.1.1476 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.56 40.0 2.32e-01 76.5% 10.6%
4033865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 44.0 3.46e-01 88.2% 49.0%
4963687 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.68e-01 88.2% 58.9%
4447297 223.6.1.1 ↗ a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.55 41.0 3.13e-01 79.4% 72.5%
3334323 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 45.0 3.44e-01 94.1% 85.5%
5083543 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 44.0 3.44e-01 92.6% 86.5%
5051481 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 43.0 3.92e-01 89.7% 91.6%
3326089 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 42.0 3.62e-01 86.8% 60.9%
2995054 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.54 43.0 3.09e-01 91.2% 67.7%
403748 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.54 43.0 3.26e-01 89.7% 57.6%
3614433 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.53 43.0 3.28e-01 88.2% 73.6%
3531200 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 43.0 3.94e-01 89.7% 87.8%
3741339 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.85e-01 88.2% 83.9%
4850052 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.53 42.0 3.04e-01 88.2% 45.8%
2995198 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.52 41.0 3.12e-01 91.2% 90.5%
3765586 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.52 41.0 3.24e-01 91.2% 79.4%
3601029 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 42.0 3.30e-01 86.8% 84.3%
3739999 11.1.1.646 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.52 44.0 3.52e-01 100.0% 55.3%
4980071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 43.0 3.56e-01 94.1% 96.8%
4958377 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.50 31.0 3.41e-01 88.2% 85.4%
3168268 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.50 41.0 2.96e-01 95.6% 32.9%