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CAD98945.1

Arc-Vir

AJ567472__CAD98945.1__X__00016

Identity

Accession:
AJ567472 ↗
Protein ID:
CAD98945.1 ↗
Kingdom:
archaea

Quality

81.1 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Ungulaviridae› Captovirus› Captovirus_AFV1

TaxID: 235266

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-69
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.74 58.0 4.18e-01 84.1% 69.8%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.65 49.0 4.63e-01 81.0% 92.2%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.63 45.0 3.72e-01 76.2% 55.0%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 50.0 3.58e-01 96.8% 91.0%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.57 43.0 3.50e-01 82.5% 66.9%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.56 44.0 3.25e-01 93.7% 93.0%
1ekjA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.55 45.0 3.17e-01 92.1% 47.6%
1b25A03 1.10.599.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 0.54 47.0 3.33e-01 100.0% 46.5%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.29e-01 76.2% 46.8%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.51 41.0 3.79e-01 87.3% 83.7%
3ilvA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 42.0 2.74e-01 96.8% 30.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048048 4957.1.1.9 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS 0.70 54.0 5.05e-01 81.0% 73.3%
3991872 632.22.1.7 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › Membralin 0.69 51.0 4.65e-01 79.4% 60.0%
3460694 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.69 47.0 4.42e-01 71.4% 70.9%
3354672 103.1.1.34 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.64 46.0 3.57e-01 74.6% 88.8%
3221435 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.64 48.0 3.37e-01 81.0% 51.2%
3618262 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 46.0 3.19e-01 79.4% 47.7%
4940072 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.60 43.0 2.83e-01 74.6% 95.2%
3477885 109.1.1.29 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Tom37+GST_C_6 0.58 46.0 3.16e-01 87.3% 39.6%
3234869 206.1.1.44 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.58 51.0 3.14e-01 100.0% 68.6%
4266228 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.58 48.0 3.00e-01 90.5% 71.7%
4020870 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 49.0 2.94e-01 95.2% 82.6%
3816002 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 43.0 2.96e-01 81.0% 57.8%
4389819 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.56 40.0 3.44e-01 88.9% 45.7%
4960621 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 50.0 2.96e-01 100.0% 49.6%
3658922 148.1.3.176 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 0.56 43.0 3.98e-01 85.7% 70.6%
4952984 268.2.1.7 ↗ a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › DUF4012 0.56 44.0 3.14e-01 87.3% 80.0%
4666985 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 40.0 3.49e-01 88.9% 49.0%
3285524 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.55 48.0 3.78e-01 100.0% 88.9%
4972022 2004.1.2.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.54 46.0 2.91e-01 100.0% 72.9%
None — 0.50 44.0 3.03e-01 98.4% 52.3%