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AJ609634.1CAE82137.1X__00055

Bact-Vir

AJ609634.1__CAE82137.1__X__00055

Identity

Accession:: AJ609634 ↗
Kingdom:: phage

Quality

93.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_EJ-1

TaxID: 12402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-118

PDB

Domain cluster: rep: IMGVR_UViG_3300005298_000040-3300005298-Ga0071330_107091546__D3-94

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08890.18 best	Phage_TAC_5	71.9	7.00e-20	100.0%	80.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kluA01	3.30.2220.30	Alpha Beta › 2-Layer Sandwich › rbstp2171 ›	0.86	79.0	7.86e-01	100.0%	92.7%
4efzB00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.59	34.0	2.47e-01	100.0%	20.8%
1eotA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.54	28.0	3.26e-01	95.3%	68.9%
1y9wA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	30.0	3.04e-01	100.0%	53.8%
1bbyA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	25.0	2.94e-01	99.1%	60.9%
1k8iA01	3.10.320.10	Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1	0.52	31.0	3.58e-01	88.7%	83.1%
6jptA00	3.30.230.90	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.50	46.0	4.39e-01	100.0%	93.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
119441	3103.1.1.1 ↗	alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_5	0.86	79.0	7.59e-01	100.0%	85.7%
3982048	327.16.1.5 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › type_II_gspD_N0	0.74	21.0	3.14e-01	80.2%	56.0%
5039151	3103.1.1.0 ↗	alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN	0.70	61.0	6.25e-01	95.3%	100.0%
4957561	6050.1.1.0 ↗	a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone	0.66	56.0	5.62e-01	100.0%	91.4%
3231161	5067.1.1.3 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched	0.57	42.0	2.51e-01	79.2%	47.9%
3938493	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.57	39.0	4.15e-01	99.1%	83.3%
3347147	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.55	49.0	4.60e-01	99.1%	94.6%
4955284	1.1.3.2 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin	0.54	24.0	3.45e-01	77.4%	95.6%
3223228	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.53	41.0	2.96e-01	100.0%	26.2%
3630104	192.24.1.6 ↗	alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD	0.52	44.0	3.00e-01	90.6%	98.4%
3379132	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.52	41.0	2.94e-01	84.9%	48.7%
3508627	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	24.0	2.90e-01	92.5%	65.7%
3403813	603.2.1.12 ↗	alpha bundles › STAT-like › STAT › STAT › 7tm_7	0.51	40.0	2.81e-01	85.8%	66.5%
3487960	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	38.0	2.82e-01	79.2%	31.7%

D2 medium residues 124-197

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2odaA00	3.40.50.1000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like	0.64	47.0	3.45e-01	77.0%	69.8%
2b5dX02	1.20.1430.10	Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain	0.59	42.0	3.59e-01	73.0%	74.6%
2lpeA02	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.57	38.0	3.91e-01	71.6%	71.8%
4gywA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	43.0	3.81e-01	85.1%	73.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3788044	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.69	51.0	3.57e-01	79.7%	82.1%
4975727	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.65	48.0	4.27e-01	81.1%	55.2%
5052392	102.1.3.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain	0.61	49.0	4.23e-01	86.5%	69.6%
3711819	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.59	42.0	3.93e-01	75.7%	67.4%
4963477	3352.1.1.0 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain	0.53	45.0	2.89e-01	95.9%	24.2%