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AJ629075.1__CAF32459.1__X__00001

Bact-Vir

AJ629075.1__CAF32459.1__X__00001

Identity

Accession:
AJ629075 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 119-171
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.66 44.0 2.91e-01 100.0% 15.3%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 55.0 3.54e-01 96.2% 25.5%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.64 45.0 4.81e-01 81.1% 93.2%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.63 47.0 4.28e-01 94.3% 58.7%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.63 45.0 3.62e-01 77.4% 37.5%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 4.04e-01 100.0% 73.3%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.61 46.0 3.76e-01 90.6% 41.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 41.0 3.09e-01 71.7% 34.5%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 4.02e-01 88.7% 61.4%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.62e-01 88.7% 42.2%
6bnzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 40.0 2.97e-01 71.7% 27.9%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 46.0 2.90e-01 100.0% 18.9%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 47.0 3.46e-01 92.5% 44.3%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.57 39.0 3.65e-01 73.6% 54.9%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 39.0 2.99e-01 71.7% 30.2%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 2.93e-01 88.7% 28.5%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 46.0 3.41e-01 94.3% 56.9%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 44.0 3.46e-01 90.6% 84.6%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 38.0 2.89e-01 73.6% 26.6%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 43.0 3.22e-01 90.6% 33.3%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.72e-01 100.0% 54.5%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.42e-01 71.7% 13.1%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 41.0 2.72e-01 84.9% 95.6%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 39.0 3.12e-01 96.2% 33.1%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 44.0 3.35e-01 100.0% 98.0%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 42.0 3.31e-01 94.3% 93.3%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.63e-01 88.7% 69.0%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.17e-01 100.0% 84.3%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 42.0 3.50e-01 96.2% 57.4%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 35.0 2.27e-01 71.7% 16.9%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 35.0 3.44e-01 71.7% 65.6%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.01e-01 90.6% 40.9%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.46e-01 88.7% 60.9%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.52 42.0 3.33e-01 90.6% 93.0%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 44.0 3.56e-01 100.0% 57.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 35.0 3.38e-01 71.7% 64.6%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 35.0 2.33e-01 73.6% 16.1%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 44.0 3.62e-01 100.0% 59.6%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.06e-01 98.1% 31.4%
6i0iA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.51 41.0 3.36e-01 92.5% 96.3%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 3.48e-01 88.7% 80.0%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.51 36.0 2.92e-01 79.2% 81.9%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.18e-01 100.0% 90.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3579807 101.1.2.709 alpha arrays › HTH › HTH › winged helix domain › Hexokinase_1 0.68 48.0 3.88e-01 73.6% 39.0%
3796107 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.68 46.0 3.92e-01 100.0% 42.2%
4226251 375.1.1.252 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.67 47.0 4.55e-01 79.2% 66.7%
4827588 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.66 46.0 3.25e-01 75.5% 24.0%
168173 4276.1.1.1 a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.65 46.0 3.74e-01 77.4% 39.4%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.64 49.0 4.23e-01 96.2% 51.7%
3618372 2484.1.1.99 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.63 50.0 3.97e-01 92.5% 50.8%
3640668 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.63 45.0 3.45e-01 75.5% 32.8%
4403166 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 50.0 4.80e-01 94.3% 84.6%
3935357 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 3.81e-01 88.7% 40.8%
3393619 284.4.1.2 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 0.62 47.0 4.82e-01 86.8% 100.0%
4081797 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.61 40.0 2.99e-01 98.1% 24.1%
4932472 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 50.0 4.33e-01 100.0% 64.2%
4124004 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 48.0 4.64e-01 94.3% 84.6%
5025460 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 42.0 3.96e-01 75.5% 58.5%
3616263 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 50.0 4.24e-01 100.0% 64.0%
3591336 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 51.0 4.10e-01 100.0% 70.4%
3439728 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.61 44.0 3.24e-01 100.0% 26.9%
3215690 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 47.0 3.02e-01 90.6% 35.1%
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 47.0 4.33e-01 96.2% 64.0%
4096100 2484.1.1.176 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.61 49.0 2.87e-01 90.6% 23.1%
3809302 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 42.0 3.71e-01 98.1% 47.1%
3924626 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.60 47.0 4.18e-01 92.5% 58.8%
4029815 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.63e-01 90.6% 40.8%
3507037 2484.1.1.176 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.60 49.0 2.89e-01 94.3% 24.5%
3199418 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 41.0 4.31e-01 73.6% 82.2%
3960733 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.59 45.0 4.00e-01 98.1% 54.1%
3191059 705.1.1.0 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N 0.59 46.0 3.85e-01 100.0% 69.2%
3998221 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 48.0 3.67e-01 100.0% 44.8%
1866896 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.58 47.0 3.55e-01 100.0% 48.4%
3514749 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 46.0 4.10e-01 96.2% 60.0%
3406485 1181.1.1.0 0.57 46.0 4.25e-01 100.0% 70.0%
3999570 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.57 43.0 3.61e-01 88.7% 50.5%
3487326 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.57 43.0 4.16e-01 88.7% 80.0%
3508724 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 47.0 4.67e-01 100.0% 94.5%
4953347 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.57 39.0 3.99e-01 75.5% 78.0%
3559516 391.1.1.28 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › CHRDL_1_2_C 0.56 48.0 3.94e-01 98.1% 92.0%
3603056 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 40.0 3.65e-01 98.1% 54.7%
3390398 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 46.0 3.46e-01 94.3% 39.9%
3575961 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 3.85e-01 96.2% 89.0%
5018714 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 3.90e-01 96.2% 70.0%
3820157 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 44.0 3.17e-01 98.1% 41.1%
3998942 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.55 41.0 3.25e-01 88.7% 59.2%
3670595 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 37.0 3.21e-01 96.2% 40.0%
4024308 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.54 41.0 2.84e-01 90.6% 23.0%
3266626 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.54 43.0 3.55e-01 88.7% 85.9%
3795449 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 43.0 3.60e-01 100.0% 53.0%
3375268 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.54 42.0 2.85e-01 88.7% 84.5%
3827309 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.54 43.0 3.72e-01 94.3% 96.7%
5032125 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 39.0 2.59e-01 83.0% 17.3%
3893043 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 39.0 2.75e-01 79.2% 85.4%
3938060 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 36.0 2.63e-01 71.7% 27.4%
3966848 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 3.24e-01 96.2% 65.5%
3585263 59.1.1.1 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5 0.52 40.0 3.28e-01 88.7% 59.1%
2490256 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.52 35.0 3.37e-01 71.7% 63.6%
3472467 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 41.0 3.77e-01 92.5% 97.3%
4097571 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.52 37.0 3.07e-01 88.7% 38.3%
4076295 375.1.1.88 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.51 36.0 3.63e-01 96.2% 74.5%
3163776 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 38.0 2.99e-01 86.8% 37.7%
3272363 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.51 35.0 3.10e-01 79.2% 49.5%
3852952 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.50 39.0 3.56e-01 92.5% 66.3%
3506512 2.1.1.168 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.50 37.0 3.35e-01 90.6% 58.9%
3266323 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.50 38.0 2.98e-01 84.9% 86.7%