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AJ629109.1__CAF32667.1__X__00008

Bact-Vir

AJ629109.1__CAF32667.1__X__00008

Identity

Accession:
AJ629109 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-110
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.78 49.0 4.96e-01 99.1% 64.5%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.76 47.0 4.28e-01 98.2% 47.6%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 46.0 4.79e-01 98.2% 66.3%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 47.0 4.16e-01 100.0% 49.0%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 50.0 4.56e-01 80.0% 68.0%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.64 55.0 4.70e-01 91.8% 92.5%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.64 37.0 4.38e-01 88.2% 85.1%
2jifA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 48.0 4.29e-01 80.0% 65.6%
1s05A00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.62 50.0 4.79e-01 89.1% 98.4%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.61 47.0 4.69e-01 90.0% 81.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 46.0 4.70e-01 88.2% 81.1%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.61 49.0 3.79e-01 86.4% 92.9%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.60 51.0 5.13e-01 94.5% 100.0%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.60 52.0 4.93e-01 96.4% 86.5%
1a7vA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.60 50.0 4.87e-01 92.7% 97.6%
6xpdA01 1.20.1510.10 Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain 0.59 51.0 4.14e-01 92.7% 90.6%
1cgnA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.59 48.0 4.69e-01 91.8% 100.0%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 41.0 4.49e-01 81.8% 88.9%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 49.0 4.67e-01 93.6% 93.1%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.58 49.0 4.10e-01 89.1% 66.1%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.58 49.0 4.67e-01 93.6% 99.2%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.58 50.0 4.88e-01 97.3% 86.4%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 48.0 4.61e-01 93.6% 100.0%
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.57 51.0 4.45e-01 99.1% 95.2%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.93e-01 86.4% 63.7%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 39.0 4.00e-01 73.6% 71.6%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 47.0 4.60e-01 93.6% 82.9%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 39.0 4.06e-01 73.6% 78.0%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.56 42.0 3.98e-01 97.3% 66.9%
3cucA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.56 47.0 3.58e-01 90.9% 54.6%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.56 41.0 4.07e-01 78.2% 81.5%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 37.0 3.91e-01 72.7% 73.5%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.55 37.0 4.20e-01 71.8% 89.4%
2ibdA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 40.0 3.66e-01 75.5% 97.3%
3f0cA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 43.0 3.92e-01 83.6% 84.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 39.0 3.66e-01 75.5% 64.7%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.54 43.0 4.09e-01 86.4% 98.4%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 4.06e-01 92.7% 74.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.53 39.0 3.75e-01 77.3% 96.0%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 37.0 4.10e-01 72.7% 100.0%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.51 43.0 4.15e-01 96.4% 100.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 4.41e-01 99.1% 95.3%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 46.0 3.94e-01 100.0% 68.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408094 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 47.0 4.42e-01 99.1% 56.3%
3692017 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 45.0 4.13e-01 99.1% 50.7%
5081092 601.7.1.2 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.67 54.0 5.22e-01 86.4% 100.0%
3388223 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 60.0 5.90e-01 99.1% 92.5%
5047547 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 48.0 4.79e-01 75.5% 100.0%
4889682 11.2.1.20 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerB 0.66 58.0 5.20e-01 96.4% 81.7%
3913373 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 55.0 5.41e-01 90.9% 100.0%
3325976 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 55.0 4.49e-01 87.3% 79.8%
3547408 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.65 54.0 4.40e-01 88.2% 76.9%
3886005 601.2.1.0 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.64 51.0 5.10e-01 86.4% 100.0%
4581508 601.19.1.1 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein 0.63 58.0 4.66e-01 100.0% 75.7%
4407957 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.63 54.0 4.51e-01 97.3% 80.0%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 40.0 4.09e-01 94.5% 65.7%
4473410 601.2.1.4 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 0.63 55.0 5.20e-01 96.4% 99.2%
5036142 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.62 51.0 4.06e-01 91.8% 50.8%
3615002 109.4.1.72 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.62 49.0 3.80e-01 85.5% 38.3%
3397343 601.16.1.3 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › GIT1_C 0.62 53.0 5.11e-01 96.4% 100.0%
3490690 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 52.0 5.07e-01 94.5% 98.4%
3333216 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.62 46.0 4.95e-01 90.9% 90.5%
3368348 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 54.0 5.06e-01 95.5% 92.6%
3828970 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 42.0 4.50e-01 80.0% 82.1%
3498895 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.61 54.0 4.98e-01 100.0% 94.5%
54434 601.2.1.0 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.61 50.0 4.89e-01 90.9% 99.2%
3678146 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 53.0 4.85e-01 92.7% 98.6%
3647808 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 41.0 4.11e-01 70.0% 92.2%
3716 601.2.1.4 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 0.60 50.0 4.90e-01 93.6% 99.2%
3676181 5048.1.1.1 alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.59 50.0 3.93e-01 90.0% 94.6%
3474661 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.59 47.0 4.67e-01 83.6% 93.9%
3567883 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 51.0 4.15e-01 100.0% 52.6%
4483437 601.13.1.2 alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS 0.59 47.0 4.55e-01 89.1% 79.2%
4013484 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.58 47.0 3.84e-01 86.4% 89.8%
1007485 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.58 41.0 4.49e-01 81.8% 88.9%
3934654 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 45.0 3.85e-01 82.7% 71.1%
5029713 109.59.1.0 alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain 0.58 43.0 4.54e-01 80.0% 95.0%
3657242 2002.1.1.93 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_77 0.58 43.0 3.11e-01 77.3% 31.5%
3224861 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.57 50.0 4.82e-01 99.1% 94.6%
3388282 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.57 45.0 4.52e-01 88.2% 100.0%
3378097 604.1.1.110 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N 0.56 48.0 4.71e-01 100.0% 84.2%
3454604 1065.1.1.1 alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.55 51.0 4.35e-01 99.1% 63.5%
3940779 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 44.0 4.58e-01 86.4% 89.5%
3341807 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.54 39.0 3.92e-01 74.5% 74.5%
3784566 604.1.1.191 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 0.54 40.0 4.21e-01 79.1% 100.0%
3376126 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.54 43.0 4.24e-01 87.3% 81.7%
3622487 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.53 49.0 4.94e-01 100.0% 99.1%
3801688 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 42.0 4.37e-01 86.4% 98.1%
3301417 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.52 36.0 3.56e-01 78.2% 67.0%
3693258 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.52 46.0 4.61e-01 99.1% 94.5%
4992790 601.2.1.0 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.52 39.0 4.18e-01 82.7% 98.9%
3742744 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 42.0 4.00e-01 84.5% 92.8%
3637653 3755.3.1.481 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554 0.51 46.0 4.11e-01 98.2% 85.8%
3840817 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.51 46.0 3.86e-01 97.3% 64.6%
3222485 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 45.0 3.74e-01 96.4% 91.4%
D2 high residues 130-228
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 44.0 4.44e-01 94.9% 65.7%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.67 49.0 4.66e-01 75.8% 87.1%
5o5jT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.67 48.0 5.16e-01 87.9% 87.1%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.67 50.0 5.51e-01 84.8% 98.7%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.65 43.0 3.88e-01 76.8% 49.6%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 46.0 5.14e-01 94.9% 97.3%
1ldjA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.63 56.0 5.22e-01 99.0% 92.7%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 51.0 5.05e-01 89.9% 95.3%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 50.0 4.79e-01 88.9% 87.2%
7shlA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.61 53.0 4.95e-01 94.9% 90.2%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 4.92e-01 90.9% 99.1%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.60 42.0 3.07e-01 72.7% 54.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.60 47.0 5.01e-01 88.9% 98.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 41.0 4.62e-01 97.0% 95.9%
4a64A02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 52.0 4.98e-01 99.0% 86.3%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.57 46.0 3.82e-01 88.9% 62.9%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 31.0 2.77e-01 83.8% 35.1%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 4.04e-01 84.8% 96.9%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 45.0 4.08e-01 89.9% 99.3%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 48.0 3.90e-01 98.0% 72.2%
8fnyA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 3.33e-01 92.9% 39.8%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 39.0 3.54e-01 76.8% 57.4%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 41.0 3.05e-01 83.8% 99.6%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 48.0 4.12e-01 100.0% 76.6%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 39.0 3.43e-01 76.8% 52.7%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 47.0 4.24e-01 100.0% 74.6%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 38.0 3.33e-01 76.8% 62.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 36.0 2.56e-01 93.9% 22.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030414 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 45.0 3.92e-01 80.8% 40.7%
4311347 604.24.1.0 alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins 0.70 53.0 5.79e-01 84.8% 97.5%
3639718 109.4.1.862 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 0.70 57.0 3.48e-01 100.0% 14.5%
4980864 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.69 48.0 4.49e-01 71.7% 78.0%
3250692 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 50.0 4.29e-01 99.0% 48.1%
3664733 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 48.0 3.21e-01 98.0% 19.2%
1503807 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.66 46.0 4.37e-01 71.7% 84.3%
3617151 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.66 58.0 3.89e-01 99.0% 32.7%
5005480 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 52.0 4.32e-01 85.9% 71.4%
4526671 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.64 52.0 3.86e-01 86.9% 49.6%
3527051 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 48.0 4.96e-01 88.9% 84.2%
3882635 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 51.0 4.78e-01 85.9% 94.2%
3504161 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.63 56.0 4.22e-01 99.0% 48.8%
4998520 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.63 44.0 4.87e-01 72.7% 100.0%
3587125 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.63 50.0 4.28e-01 86.9% 80.0%
3108769 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.62 43.0 4.88e-01 91.9% 100.0%
1019365 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.61 50.0 4.82e-01 88.9% 88.7%
3590189 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.61 48.0 4.17e-01 86.9% 74.4%
3407072 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 46.0 4.99e-01 86.9% 100.0%
4977808 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 41.0 4.67e-01 98.0% 98.6%
4943123 604.12.1.134 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › AAA 0.60 42.0 4.54e-01 97.0% 85.9%
60156 109.10.1.0 alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.59 52.0 4.05e-01 97.0% 55.0%
3268622 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.59 44.0 4.36e-01 89.9% 75.2%
4936312 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.59 48.0 4.68e-01 89.9% 93.6%
3738901 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.58 50.0 3.92e-01 97.0% 57.7%
4215095 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.57 44.0 3.12e-01 100.0% 24.4%
3198423 5000.6.1.0 alpha arrays › Toxins' membrane translocation domains › Tethering factor for nuclear proteasome cut8 › Tethering factor for nuclear proteasome cut8 0.57 46.0 3.64e-01 98.0% 41.4%
3277674 109.3.1.377 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF26994 0.57 53.0 4.60e-01 100.0% 84.8%
3684480 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 4.37e-01 97.0% 73.9%
3395101 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.57 44.0 3.37e-01 84.8% 92.5%
3781461 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 51.0 3.41e-01 98.0% 30.0%
3993510 109.4.1.546 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 0.56 48.0 3.52e-01 97.0% 41.8%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.55 49.0 3.11e-01 100.0% 44.2%
4000733 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.54 42.0 3.87e-01 83.8% 76.2%
5053943 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.54 48.0 4.21e-01 100.0% 93.3%
5072449 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.54 42.0 4.39e-01 90.9% 93.3%
3683778 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.54 46.0 4.54e-01 100.0% 88.6%
3733621 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.54 47.0 3.07e-01 100.0% 62.2%
4497185 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.54 41.0 3.88e-01 81.8% 82.5%
3272247 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.50 36.0 3.20e-01 74.7% 96.6%
D3 high residues 233-345
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.68 29.0 4.00e-01 85.0% 77.6%
2okuA00 1.20.120.470 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain 0.60 41.0 4.05e-01 100.0% 65.6%
3ay5A02 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.59 46.0 4.03e-01 100.0% 55.8%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 41.0 3.88e-01 100.0% 64.7%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 32.0 3.39e-01 83.2% 64.1%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 31.0 3.14e-01 100.0% 57.4%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.53 36.0 3.38e-01 100.0% 54.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 31.0 3.71e-01 83.2% 90.4%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.52 29.0 3.22e-01 83.2% 65.9%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 34.0 3.48e-01 85.0% 68.8%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 32.0 3.46e-01 100.0% 77.3%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 39.0 3.80e-01 99.1% 72.9%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 30.0 2.95e-01 83.2% 52.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3654060 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.69 35.0 2.75e-01 100.0% 23.1%
3288918 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.67 36.0 3.37e-01 84.1% 41.4%
3370463 5069.1.1.49 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › TIC20 0.64 40.0 3.90e-01 96.5% 56.8%
4975860 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 40.0 4.41e-01 100.0% 84.7%
4982662 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.60 40.0 3.81e-01 100.0% 55.7%
4371507 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.60 40.0 4.26e-01 99.1% 81.1%
3165010 632.16.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › N-terminal domain of a replication restart primosome factor PriC › N-terminal domain of a replication restart primosome factor PriC › PriC 0.59 41.0 4.60e-01 98.2% 95.3%
3182527 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 34.0 3.59e-01 84.1% 61.0%
4936754 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.58 34.0 3.33e-01 98.2% 51.7%
3302992 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.57 40.0 3.40e-01 100.0% 43.8%
4017733 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.57 41.0 3.65e-01 100.0% 51.5%
3547829 6157.1.1.1 alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.56 43.0 4.35e-01 99.1% 82.7%
3611470 6004.1.1.0 extended segments › FATC domain › FATC domain › FATC domain 0.55 37.0 3.74e-01 99.1% 67.0%
3239453 601.1.2.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Vinculin 0.55 38.0 3.62e-01 97.3% 59.3%
4974816 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 39.0 3.97e-01 100.0% 82.7%
3923061 5001.1.1.106 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.51 44.0 3.15e-01 100.0% 31.5%
2512963 633.21.1.1 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF326 0.51 36.0 3.49e-01 100.0% 63.6%
3956224 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 37.0 3.28e-01 100.0% 48.9%
3718782 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 30.0 2.44e-01 81.4% 28.3%
3496310 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 34.0 3.37e-01 85.0% 65.0%