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AJ630128.1__CAF34089.1__S-PM2p025__00025
Bact-VirAJ630128.1__CAF34089.1__S-PM2p025__00025
Identity
- Accession:
- AJ630128 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nodensvirus›
Synechococcus_phage_S-PM2
TaxID: 238854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-17_34-73
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ztmA02 | 1.10.287.2480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 43.0 | 2.85e-01 | 73.2% | 86.4% |
| 7x0fA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.60 | 45.0 | 3.36e-01 | 80.4% | 88.5% |
| 4qyrA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.59 | 38.0 | 3.36e-01 | 82.1% | 41.3% |
| 5e5nA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.56 | 38.0 | 3.16e-01 | 76.8% | 38.8% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.45e-01 | 83.9% | 81.6% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.46e-01 | 82.1% | 100.0% |
| 4zdnA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.54 | 35.0 | 3.03e-01 | 82.1% | 39.4% |
| 3kdrA03 | 3.30.1120.70 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 37.0 | 3.88e-01 | 73.2% | 100.0% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.29e-01 | 71.4% | 93.3% |
| 1kvdB00 | 3.30.44.10 | Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain | 0.52 | 39.0 | 3.58e-01 | 83.9% | 85.7% |
| 1y14D01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.52 | 37.0 | 3.45e-01 | 78.6% | 91.8% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 40.0 | 3.49e-01 | 92.9% | 85.7% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.51 | 41.0 | 3.55e-01 | 94.6% | 95.8% |
| 1s3rA03 | 3.40.30.40 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin | 0.50 | 38.0 | 3.00e-01 | 83.9% | 39.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3476190 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 45.0 | 3.27e-01 | 76.8% | 27.0% |
| 3164508 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.60 | 41.0 | 2.89e-01 | 71.4% | 60.6% |
| 3415261 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.59 | 43.0 | 3.18e-01 | 75.0% | 39.4% |
| 3349323 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.59 | 41.0 | 3.69e-01 | 73.2% | 95.0% |
| 3727195 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 46.0 | 3.73e-01 | 96.4% | 99.2% |
| 3697090 | 323.1.1.12 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N | 0.55 | 39.0 | 2.76e-01 | 76.8% | 23.7% |
| 1870490 | 3228.1.1.1 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Gp6_C-III | 0.54 | 44.0 | 4.10e-01 | 98.2% | 100.0% |
| 3968511 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.51 | 40.0 | 2.91e-01 | 89.3% | 57.1% |
| 3657900 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 37.0 | 3.30e-01 | 78.6% | 62.4% |