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AJ630128.1__CAF34107.1__S-PM2p043__00043
Bact-VirAJ630128.1__CAF34107.1__S-PM2p043__00043
Identity
- Accession:
- AJ630128 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nodensvirus›
Synechococcus_phage_S-PM2
TaxID: 238854
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 50.0 | 4.43e-01 | 73.7% | 50.6% |
| 2xq9A02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.71 | 49.0 | 3.79e-01 | 71.9% | 33.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 51.0 | 4.61e-01 | 78.9% | 61.0% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.68 | 53.0 | 3.59e-01 | 84.2% | 26.4% |
| 3h2dB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.67 | 48.0 | 3.49e-01 | 75.4% | 62.3% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.67 | 59.0 | 4.74e-01 | 100.0% | 59.3% |
| 3f1iH00 | 1.20.5.1940 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 50.0 | 4.16e-01 | 100.0% | 46.9% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 55.0 | 4.67e-01 | 91.2% | 81.5% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 49.0 | 4.73e-01 | 78.9% | 84.1% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.65 | 56.0 | 4.05e-01 | 100.0% | 34.3% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 52.0 | 4.64e-01 | 87.7% | 91.3% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.65 | 53.0 | 4.11e-01 | 94.7% | 76.3% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 54.0 | 4.58e-01 | 100.0% | 54.8% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 49.0 | 4.32e-01 | 84.2% | 71.3% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.64 | 54.0 | 5.03e-01 | 100.0% | 76.7% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 5.15e-01 | 87.7% | 100.0% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 55.0 | 4.79e-01 | 100.0% | 65.6% |
| 2b7mA00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.63 | 49.0 | 2.91e-01 | 89.5% | 10.1% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.63 | 53.0 | 5.35e-01 | 100.0% | 94.8% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.63 | 51.0 | 4.35e-01 | 89.5% | 85.9% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 53.0 | 4.01e-01 | 93.0% | 39.6% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 54.0 | 4.58e-01 | 98.2% | 77.1% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 48.0 | 3.83e-01 | 86.0% | 42.4% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 52.0 | 4.91e-01 | 91.2% | 79.1% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 55.0 | 4.35e-01 | 100.0% | 50.9% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 52.0 | 4.68e-01 | 98.2% | 88.9% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 52.0 | 4.92e-01 | 100.0% | 100.0% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 53.0 | 4.85e-01 | 100.0% | 90.7% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 53.0 | 4.76e-01 | 100.0% | 88.9% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.60 | 52.0 | 4.32e-01 | 100.0% | 54.4% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 49.0 | 4.56e-01 | 100.0% | 91.0% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 49.0 | 4.92e-01 | 91.2% | 96.6% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 49.0 | 4.89e-01 | 93.0% | 93.3% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 46.0 | 4.90e-01 | 89.5% | 98.0% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.59 | 51.0 | 4.68e-01 | 100.0% | 82.9% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 48.0 | 4.42e-01 | 91.2% | 74.7% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 48.0 | 4.31e-01 | 98.2% | 65.0% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 51.0 | 4.97e-01 | 100.0% | 90.6% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.58 | 48.0 | 2.96e-01 | 96.5% | 27.5% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 3.94e-01 | 98.2% | 80.8% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 48.0 | 3.82e-01 | 93.0% | 52.1% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.58 | 50.0 | 4.15e-01 | 100.0% | 54.2% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.57 | 49.0 | 4.34e-01 | 100.0% | 75.0% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 44.0 | 4.50e-01 | 86.0% | 94.3% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.56 | 49.0 | 4.45e-01 | 100.0% | 96.2% |
| 1t11A02 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.56 | 48.0 | 3.55e-01 | 100.0% | 66.9% |
| 3oqbH02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 39.0 | 2.58e-01 | 75.4% | 64.0% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 45.0 | 3.99e-01 | 100.0% | 60.6% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 46.0 | 3.87e-01 | 100.0% | 56.3% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.52 | 44.0 | 3.58e-01 | 98.2% | 99.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962699 | 101.1.2.924 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7342 | 0.73 | 64.0 | 4.60e-01 | 100.0% | 38.2% |
| 4980072 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 64.0 | 4.66e-01 | 100.0% | 36.1% |
| 3925829 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 54.0 | 4.31e-01 | 84.2% | 68.2% |
| 4132296 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 51.0 | 5.05e-01 | 78.9% | 83.3% |
| 5054079 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.68 | 56.0 | 4.94e-01 | 87.7% | 80.0% |
| 3303197 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.68 | 50.0 | 4.20e-01 | 78.9% | 56.8% |
| 3491689 | 604.1.1.159 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM120A-B | 0.68 | 55.0 | 4.35e-01 | 91.2% | 63.3% |
| 3728039 | 632.7.1.28 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Yae1_N | 0.67 | 52.0 | 4.26e-01 | 91.2% | 45.7% |
| 5077926 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.67 | 60.0 | 4.50e-01 | 100.0% | 48.1% |
| 3382794 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.67 | 58.0 | 3.68e-01 | 100.0% | 19.3% |
| 3844040 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 56.0 | 5.40e-01 | 100.0% | 84.6% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.66 | 53.0 | 4.63e-01 | 86.0% | 83.5% |
| 3230613 | 3755.3.1.410 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Nup88 | 0.66 | 56.0 | 3.26e-01 | 100.0% | 10.6% |
| 3386463 | 3538.1.1.5 ↗ | extended segments › MerF › MerF › MerF › FHIPEP | 0.64 | 53.0 | 5.39e-01 | 89.5% | 100.0% |
| 3742115 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.64 | 54.0 | 3.72e-01 | 93.0% | 30.0% |
| 3583169 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 52.0 | 4.75e-01 | 100.0% | 67.5% |
| 4015612 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.63 | 52.0 | 4.70e-01 | 100.0% | 76.5% |
| 2831866 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.62 | 49.0 | 3.89e-01 | 87.7% | 48.8% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.62 | 54.0 | 4.83e-01 | 98.2% | 87.5% |
| 5018554 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 49.0 | 4.08e-01 | 86.0% | 50.0% |
| 4019360 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 48.0 | 3.53e-01 | 87.7% | 95.0% |
| 3838083 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.61 | 54.0 | 5.04e-01 | 100.0% | 84.3% |
| 3195418 | 192.8.1.376 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 | 0.61 | 52.0 | 4.48e-01 | 100.0% | 61.1% |
| 4930112 | 3558.1.1.0 ↗ | alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain | 0.61 | 48.0 | 4.28e-01 | 89.5% | 65.9% |
| 3294780 | 3755.3.1.375 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 | 0.60 | 53.0 | 3.92e-01 | 100.0% | 44.0% |
| 3471757 | 192.29.1.140 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Frag1 | 0.60 | 51.0 | 3.88e-01 | 100.0% | 40.7% |
| 4258322 | 5086.1.1.189 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CzcB | 0.59 | 52.0 | 4.89e-01 | 98.2% | 82.9% |
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.59 | 49.0 | 4.02e-01 | 100.0% | 98.3% |
| 4274798 | 5050.1.1.25 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TLC | 0.59 | 52.0 | 3.45e-01 | 98.2% | 63.4% |
| 3428543 | 604.6.1.23 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › UPF0220 | 0.59 | 50.0 | 3.86e-01 | 100.0% | 95.7% |
| 3457023 | 109.4.1.23 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › B56 | 0.58 | 48.0 | 2.87e-01 | 91.2% | 27.5% |
| 4030523 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.58 | 50.0 | 3.43e-01 | 98.2% | 26.5% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.58 | 48.0 | 4.23e-01 | 100.0% | 61.1% |
| 3635674 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.58 | 49.0 | 4.48e-01 | 100.0% | 91.3% |
| 3597083 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.57 | 46.0 | 3.81e-01 | 89.5% | 61.9% |
| 3518835 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 4.09e-01 | 96.5% | 57.0% |
| 3731383 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.57 | 47.0 | 4.05e-01 | 98.2% | 64.0% |
| 4603873 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.57 | 46.0 | 2.85e-01 | 100.0% | 13.4% |
| 3376068 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 44.0 | 2.65e-01 | 98.2% | 11.3% |
| 4881130 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.54 | 46.0 | 3.92e-01 | 96.5% | 58.9% |
| 3595254 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.54 | 47.0 | 3.22e-01 | 100.0% | 28.3% |
| 3783911 | 633.6.1.24 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › FKS1_dom2 | 0.54 | 45.0 | 3.47e-01 | 100.0% | 40.0% |
| 3625044 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.53 | 45.0 | 3.76e-01 | 100.0% | 56.2% |
| 3442316 | 3922.1.1.258 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Nnf1 | 0.51 | 45.0 | 3.36e-01 | 96.5% | 42.2% |