CAG28268.1

Arc-Vir

AJ703801__CAG28268.1__X__00007

Identity

Accession:: AJ703801 ↗
Protein ID:: CAG28268.1 ↗
Kingdom:: archaea

Quality

73.1 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Icerudivirus› Sulfolobus_islandicus_rod-shaped_virus_1

TaxID: 157898

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-97_99-104

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2h36X00	3.30.160.300	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.60	51.0	4.99e-01	99.0%	86.1%
1ii2B01	3.40.449.10	Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1	0.59	40.0	3.33e-01	86.9%	39.3%
1e3hA01	3.30.230.70	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain	0.57	45.0	3.36e-01	83.8%	65.3%
4alzA01	3.30.1340.30	Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; ›	0.57	30.0	3.65e-01	90.9%	80.6%
2gukA00	3.30.2190.10	Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like	0.54	47.0	4.56e-01	97.0%	86.5%
6u8yK01	3.30.460.80	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit	0.53	42.0	3.63e-01	84.8%	70.1%
3gr0D01	3.30.70.1780	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	23.0	3.53e-01	91.9%	100.0%
4tpsD00	3.30.300.180	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain	0.52	32.0	3.41e-01	96.0%	70.2%
1vehA01	3.30.300.130	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA)	0.51	30.0	3.38e-01	96.0%	76.0%
5je8B01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.50	39.0	3.35e-01	82.8%	57.2%
3ws7A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.50	40.0	3.38e-01	85.9%	56.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
164598	331.15.1.1 ↗	a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374	0.60	51.0	4.99e-01	99.0%	86.1%
3347265	327.6.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like	0.58	30.0	3.61e-01	93.9%	75.4%
4344883	320.4.1.1 ↗	a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C	0.58	41.0	4.03e-01	74.7%	72.7%
4612013	3186.1.1.1 ↗	a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook	0.55	40.0	4.13e-01	76.8%	100.0%
5022296	242.1.1.7 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3	0.55	35.0	3.61e-01	92.9%	66.3%
3439658	327.10.1.9 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N-like_STI	0.52	33.0	3.66e-01	94.9%	82.7%
5049699	327.11.1.7 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd	0.52	32.0	3.62e-01	96.0%	82.7%
4220776	4272.1.1.1 ↗	a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa	0.52	41.0	3.36e-01	86.9%	60.5%
4506641	327.10.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related	0.51	32.0	3.43e-01	96.0%	74.1%
3964458	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.51	36.0	3.79e-01	73.7%	84.4%
3974338	2496.1.1.0 ↗	a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like	0.50	34.0	3.47e-01	88.9%	71.6%