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AJ842011.2__CAH56686.1__PHG11b_59__00059
Bact-VirAJ842011.2__CAH56686.1__PHG11b_59__00059
Identity
- Accession:
- AJ842011 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-44
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.55 | 44.0 | 2.99e-01 | 97.4% | 60.5% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.53 | 37.0 | 3.20e-01 | 76.9% | 45.6% |
D2
high
residues 54-104
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 66.0 | 5.99e-01 | 90.2% | 80.9% |
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 51.0 | 4.37e-01 | 74.5% | 59.3% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 50.0 | 4.17e-01 | 74.5% | 63.2% |
| 3sekC02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 45.0 | 4.18e-01 | 86.3% | 57.1% |
| 7eebI01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.63 | 45.0 | 3.12e-01 | 74.5% | 31.4% |
| 1tbrR01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.63 | 43.0 | 4.36e-01 | 90.2% | 72.5% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.62 | 46.0 | 4.85e-01 | 94.1% | 93.3% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 46.0 | 3.72e-01 | 100.0% | 45.5% |
| 1m0wB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.57 | 40.0 | 3.89e-01 | 88.2% | 66.7% |
| 5hkxA04 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 44.0 | 4.66e-01 | 98.0% | 97.7% |
| 4qglA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.13e-01 | 94.1% | 75.9% |
| 2yu4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 46.0 | 3.79e-01 | 100.0% | 68.1% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 41.0 | 4.34e-01 | 84.3% | 100.0% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.52 | 41.0 | 3.60e-01 | 94.1% | 95.2% |
| 2pn0A02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.52 | 41.0 | 3.55e-01 | 88.2% | 80.5% |
| 2kz6A01 | 6.10.140.1310 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 36.0 | 3.21e-01 | 76.5% | 53.1% |
| 3rgcA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.51 | 38.0 | 2.69e-01 | 86.3% | 24.7% |
| 3pm9A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 41.0 | 3.21e-01 | 94.1% | 90.2% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3058113 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.86 | 70.0 | 7.01e-01 | 88.2% | 98.1% |
| 1030873 | 101.1.14.1 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-TevI_DNA-bd | 0.85 | 69.0 | 6.41e-01 | 90.2% | 71.4% |
| 5080684 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.70 | 49.0 | 3.48e-01 | 74.5% | 37.4% |
| 5030278 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.67 | 48.0 | 2.90e-01 | 80.4% | 19.5% |
| 5049190 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.67 | 50.0 | 2.96e-01 | 82.4% | 20.0% |
| 4930554 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 44.0 | 4.27e-01 | 70.6% | 81.7% |
| 4517004 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.66 | 48.0 | 2.80e-01 | 78.4% | 17.8% |
| 4947285 | 314.1.1.50 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › HGTP_anticodon | 0.66 | 47.0 | 2.77e-01 | 78.4% | 17.4% |
| 5027835 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.65 | 47.0 | 2.86e-01 | 80.4% | 15.2% |
| 3750234 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 49.0 | 5.11e-01 | 88.2% | 93.3% |
| 3602275 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.65 | 46.0 | 2.73e-01 | 78.4% | 17.9% |
| 3576729 | 375.1.1.146 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 | 0.65 | 42.0 | 4.11e-01 | 100.0% | 61.8% |
| 3223570 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 50.0 | 3.70e-01 | 88.2% | 75.0% |
| 3593943 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.63 | 45.0 | 2.62e-01 | 78.4% | 15.1% |
| 3213253 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 49.0 | 3.41e-01 | 88.2% | 76.7% |
| 4988977 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 46.0 | 4.88e-01 | 86.3% | 97.7% |
| 3886999 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.62 | 45.0 | 4.85e-01 | 84.3% | 100.0% |
| 3574854 | 375.1.1.267 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10, zf-CCCH_Mcm10 | 0.62 | 41.0 | 3.50e-01 | 100.0% | 41.2% |
| 222312 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 46.0 | 4.85e-01 | 94.1% | 93.3% |
| 5011230 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.61 | 44.0 | 2.62e-01 | 80.4% | 18.0% |
| 3923587 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 47.0 | 4.93e-01 | 94.1% | 100.0% |
| 3545113 | 386.1.1.126 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 | 0.61 | 47.0 | 4.89e-01 | 94.1% | 100.0% |
| 3699968 | 2003.1.5.52 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_PK | 0.60 | 49.0 | 3.10e-01 | 88.2% | 82.3% |
| 4000100 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.60 | 49.0 | 4.43e-01 | 90.2% | 88.6% |
| 3859106 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 44.0 | 4.58e-01 | 88.2% | 95.6% |
| 3885453 | 386.1.1.257 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_Z280C_D | 0.59 | 40.0 | 4.26e-01 | 88.2% | 92.5% |
| 3311630 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.58 | 52.0 | 4.29e-01 | 100.0% | 62.2% |
| 3751772 | 386.1.1.297 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZFHX3 | 0.58 | 45.0 | 3.57e-01 | 86.3% | 58.1% |
| 3213903 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 46.0 | 3.81e-01 | 92.2% | 100.0% |
| 4668224 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 38.0 | 3.97e-01 | 88.2% | 75.6% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 43.0 | 4.14e-01 | 84.3% | 91.7% |
| 3523490 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 44.0 | 3.82e-01 | 86.3% | 76.2% |
| 3483496 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 41.0 | 4.31e-01 | 92.2% | 91.1% |
| 3773803 | 386.1.1.358 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 | 0.56 | 43.0 | 3.36e-01 | 92.2% | 37.5% |
| 4274063 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.56 | 38.0 | 2.91e-01 | 92.2% | 30.0% |
| 3627483 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 43.0 | 2.83e-01 | 90.2% | 45.1% |
| 5035538 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.55 | 45.0 | 2.73e-01 | 94.1% | 16.3% |
| 3542259 | 386.1.1.390 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_5, zf-C2H2_11 | 0.55 | 45.0 | 3.18e-01 | 100.0% | 37.8% |
| 4986348 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.55 | 44.0 | 3.00e-01 | 94.1% | 29.8% |
| 5024147 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.55 | 44.0 | 2.61e-01 | 94.1% | 13.3% |
| 4472979 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.54 | 44.0 | 2.67e-01 | 94.1% | 16.8% |
| 3916572 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 42.0 | 4.24e-01 | 94.1% | 92.0% |
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 41.0 | 3.76e-01 | 96.1% | 63.2% |
| 5054247 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 43.0 | 4.06e-01 | 94.1% | 93.8% |
| 4331385 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 43.0 | 3.98e-01 | 94.1% | 90.0% |
| 4116298 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.53 | 36.0 | 2.72e-01 | 88.2% | 27.7% |
| 5049743 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.52 | 41.0 | 2.55e-01 | 94.1% | 14.7% |
| 3246864 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 43.0 | 3.34e-01 | 100.0% | 41.7% |
| 3779926 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.51 | 44.0 | 3.99e-01 | 100.0% | 72.6% |
| 3486285 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 45.0 | 3.97e-01 | 100.0% | 72.0% |
| 3694248 | 4224.1.1.1 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY | 0.51 | 38.0 | 3.47e-01 | 98.0% | 58.9% |
| 4587872 | 375.1.1.270 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-DPOE | 0.51 | 36.0 | 2.82e-01 | 94.1% | 32.5% |
| 3737858 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.51 | 43.0 | 4.16e-01 | 100.0% | 90.0% |
| 4014325 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 43.0 | 3.92e-01 | 100.0% | 75.7% |