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AJ972879.2__CCE26154.1__X__00131

Bact-Vir

AJ972879.2__CCE26154.1__X__00131

Identity

Accession:
AJ972879 ↗
Kingdom:
phage

Quality

60.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_phiR1-37

TaxID: 331278

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-54
PDB
D2 high residues 152-200
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.79 58.0 5.29e-01 100.0% 60.0%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.64 44.0 4.24e-01 100.0% 64.3%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 47.0 4.17e-01 89.8% 84.0%
2mf4A01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.62 50.0 4.30e-01 100.0% 56.1%
3cl3A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 45.0 3.86e-01 85.7% 77.3%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.14e-01 100.0% 18.6%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 2.84e-01 100.0% 16.8%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 2.85e-01 85.7% 74.5%
2mr7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 43.0 3.67e-01 100.0% 50.5%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 41.0 3.69e-01 85.7% 97.2%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 43.0 3.09e-01 100.0% 87.8%
4fwdA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 41.0 3.53e-01 85.7% 71.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592511 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.72 55.0 5.08e-01 85.7% 96.9%
3505559 101.1.6.19 ↗ alpha arrays › HTH › HTH › TrpR › PAX 0.69 36.0 3.05e-01 89.8% 33.3%
4934146 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 43.0 3.86e-01 95.9% 45.7%
2658718 101.1.1.251 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.65 39.0 4.12e-01 89.8% 66.7%
4964632 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.63 48.0 2.95e-01 81.6% 18.6%
4174590 101.1.2.61 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.60 38.0 3.52e-01 91.8% 47.7%
5040788 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 36.0 3.29e-01 83.7% 44.6%
3717926 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.57 46.0 3.86e-01 95.9% 50.5%
5024511 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 34.0 3.41e-01 93.9% 60.0%
4026617 148.1.1.8 ↗ alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa 0.55 40.0 3.36e-01 100.0% 43.3%
4151007 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 46.0 4.08e-01 98.0% 93.3%
3215307 145.1.1.27 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › DUF3557 0.52 41.0 2.71e-01 85.7% 65.0%
3219897 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 34.0 3.46e-01 91.8% 68.0%