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AJ972879.2__CCE26173.1__X__00150
Bact-VirAJ972879.2__CCE26173.1__X__00150
Identity
- Accession:
- AJ972879 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-87_308-434_448-477
Domain cluster:
rep: IMGVR_UViG_648028040_000001-648028040-648194435__D26-229
D2
high
residues 102-300
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jvgA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.55 | 33.0 | 3.51e-01 | 80.9% | 66.5% |
| 2c1iA01 | 3.30.565.50 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.53 | 27.0 | 3.45e-01 | 71.4% | 83.8% |
| 1okjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 23.0 | 3.29e-01 | 70.4% | 85.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060660 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.79 | 43.0 | 5.52e-01 | 93.5% | 88.3% |
| 4995821 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.77 | 54.0 | 6.04e-01 | 94.5% | 88.7% |
| 1824160 | 395.1.1.2 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_N | 0.55 | 18.0 | 3.02e-01 | 71.9% | 82.8% |
| 4938125 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.54 | 24.0 | 3.50e-01 | 79.4% | 92.9% |
| 3285634 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 20.0 | 2.82e-01 | 77.4% | 73.3% |
D3
medium
residues 435-447_478-534
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 35.0 | 3.88e-01 | 95.7% | 66.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083229 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.57 | 50.0 | 3.49e-01 | 100.0% | 30.4% |
| 5028352 | 103.4.1.30 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28863 | 0.57 | 37.0 | 3.54e-01 | 100.0% | 55.3% |
| 4952741 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.55 | 38.0 | 3.41e-01 | 98.6% | 50.0% |
| 4633580 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.54 | 46.0 | 3.84e-01 | 98.6% | 84.6% |
| 4202660 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.51 | 44.0 | 3.60e-01 | 100.0% | 51.1% |
D4
medium
residues 535-590
Domain cluster:
rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00065__D802-873
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 47.0 | 3.78e-01 | 78.6% | 36.0% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 44.0 | 3.33e-01 | 82.1% | 26.8% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 45.0 | 3.80e-01 | 78.6% | 40.2% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 47.0 | 3.82e-01 | 78.6% | 43.9% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.64 | 44.0 | 3.52e-01 | 76.8% | 34.7% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 41.0 | 3.33e-01 | 76.8% | 32.8% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 3.77e-01 | 78.6% | 84.2% |
| 1amuA04 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.62 | 41.0 | 3.53e-01 | 78.6% | 40.6% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 44.0 | 2.97e-01 | 78.6% | 19.9% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 46.0 | 3.79e-01 | 80.4% | 86.3% |
| 2ltsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 40.0 | 3.57e-01 | 73.2% | 44.2% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 43.0 | 3.59e-01 | 78.6% | 43.9% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 42.0 | 2.71e-01 | 75.0% | 92.7% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 43.0 | 3.40e-01 | 78.6% | 40.6% |
| 1pu1A00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.59 | 44.0 | 3.82e-01 | 82.1% | 51.6% |
| 6fdfA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 2.88e-01 | 76.8% | 24.1% |
| 8f4rA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.57 | 43.0 | 3.67e-01 | 82.1% | 47.9% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 41.0 | 3.27e-01 | 82.1% | 39.8% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 40.0 | 2.58e-01 | 80.4% | 96.8% |
| 2xefA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 41.0 | 2.66e-01 | 83.9% | 15.6% |
| 4j7hA02 | 3.90.79.40 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit | 0.55 | 34.0 | 2.52e-01 | 73.2% | 20.6% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 40.0 | 2.61e-01 | 82.1% | 56.6% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.24e-01 | 78.6% | 45.5% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.01e-01 | 78.6% | 37.9% |
| 7jiuA03 | 3.30.1010.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 | 0.53 | 35.0 | 2.79e-01 | 78.6% | 28.7% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.16e-01 | 76.8% | 84.8% |
| 2o3oA01 | 2.40.128.690 | Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like | 0.52 | 35.0 | 2.83e-01 | 71.4% | 34.7% |
| 4fmrA02 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.52 | 38.0 | 3.42e-01 | 83.9% | 59.1% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.51 | 35.0 | 2.36e-01 | 73.2% | 50.2% |
| 2eo4A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 37.0 | 2.85e-01 | 80.4% | 48.3% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.16e-01 | 78.6% | 52.1% |
| 3bp1A02 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.51 | 37.0 | 2.82e-01 | 78.6% | 66.2% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.06e-01 | 78.6% | 42.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957559 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.92 | 79.0 | 6.40e-01 | 92.9% | 60.0% |
| 3484890 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.71 | 51.0 | 4.35e-01 | 78.6% | 46.3% |
| 3680618 | 11.1.1.982 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PIG-X | 0.66 | 51.0 | 3.45e-01 | 83.9% | 24.0% |
| 3788989 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.65 | 46.0 | 4.16e-01 | 78.6% | 53.8% |
| 3974097 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.64 | 48.0 | 3.84e-01 | 85.7% | 39.2% |
| 3385833 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.63 | 46.0 | 2.84e-01 | 80.4% | 22.7% |
| 2907089 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.62 | 46.0 | 3.69e-01 | 80.4% | 40.2% |
| 3730813 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.60 | 44.0 | 3.49e-01 | 82.1% | 35.4% |
| 3787852 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.60 | 44.0 | 3.56e-01 | 82.1% | 43.3% |
| 4312327 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 3.43e-01 | 83.9% | 33.8% |
| 5023739 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.60 | 41.0 | 3.45e-01 | 75.0% | 41.0% |
| 4898995 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.60 | 45.0 | 3.96e-01 | 85.7% | 81.1% |
| 3447062 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.60 | 46.0 | 3.11e-01 | 83.9% | 50.0% |
| 4974677 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.59 | 41.0 | 3.05e-01 | 75.0% | 26.6% |
| 3456243 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.57 | 42.0 | 2.78e-01 | 83.9% | 18.4% |
| 4936297 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.57 | 41.0 | 3.05e-01 | 83.9% | 30.3% |
| 5079022 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.56 | 41.0 | 3.37e-01 | 83.9% | 40.9% |
| 3577681 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.56 | 42.0 | 2.77e-01 | 85.7% | 30.2% |
| 3924671 | 304.8.1.71 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 | 0.55 | 40.0 | 3.41e-01 | 78.6% | 44.0% |
| 3257433 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 33.0 | 2.60e-01 | 76.8% | 24.4% |
| 3937002 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 40.0 | 2.55e-01 | 83.9% | 34.4% |
| 3165564 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.54 | 39.0 | 3.11e-01 | 82.1% | 33.3% |
| 4538612 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.54 | 41.0 | 2.56e-01 | 87.5% | 26.2% |
| 3934766 | 11.1.1.835 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Irg-7 | 0.53 | 38.0 | 2.89e-01 | 75.0% | 45.2% |
| 1309072 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.53 | 34.0 | 3.12e-01 | 78.6% | 46.8% |
| 3838763 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.53 | 37.0 | 3.34e-01 | 80.4% | 50.6% |
| 5041889 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.52 | 37.0 | 2.61e-01 | 76.8% | 77.0% |
| 4015832 | 230.1.1.0 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like | 0.52 | 35.0 | 3.00e-01 | 73.2% | 93.3% |
| 4943280 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.50 | 35.0 | 2.91e-01 | 75.0% | 57.4% |