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AJ972879.2__CCE26196.1__X__00173
Bact-VirAJ972879.2__CCE26196.1__X__00173
Identity
- Accession:
- AJ972879 ↗
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-56
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ocpB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.75 | 55.0 | 4.10e-01 | 84.9% | 32.0% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.70 | 55.0 | 4.74e-01 | 86.8% | 59.5% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 44.0 | 4.47e-01 | 96.2% | 64.2% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 56.0 | 4.60e-01 | 98.1% | 63.1% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 47.0 | 4.14e-01 | 77.4% | 51.9% |
| 3aogA01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 40.0 | 3.80e-01 | 84.9% | 53.2% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.64 | 52.0 | 3.30e-01 | 92.5% | 64.6% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.64 | 47.0 | 4.26e-01 | 83.0% | 81.8% |
| 1gzsB00 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.64 | 52.0 | 3.75e-01 | 94.3% | 65.5% |
| 3pm6A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 50.0 | 3.14e-01 | 88.7% | 90.2% |
| 3cegA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 48.0 | 3.10e-01 | 90.6% | 38.4% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.61 | 42.0 | 4.07e-01 | 73.6% | 64.4% |
| 4icsA01 | 3.40.1830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Thermophilic metalloprotease-like › Thermophilic metalloprotease (M29) | 0.61 | 49.0 | 3.37e-01 | 88.7% | 97.3% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.60 | 51.0 | 4.87e-01 | 94.3% | 87.1% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.60 | 44.0 | 3.78e-01 | 83.0% | 50.0% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.58 | 44.0 | 4.44e-01 | 86.8% | 84.6% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.58 | 44.0 | 4.66e-01 | 83.0% | 100.0% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.58 | 46.0 | 3.82e-01 | 88.7% | 61.2% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.57 | 47.0 | 3.02e-01 | 96.2% | 52.5% |
| 3bemB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.57 | 50.0 | 3.38e-01 | 100.0% | 47.4% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.57 | 39.0 | 3.53e-01 | 84.9% | 50.0% |
| 1p5zB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.19e-01 | 100.0% | 60.7% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.56 | 43.0 | 3.65e-01 | 92.5% | 90.5% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.56 | 43.0 | 3.31e-01 | 86.8% | 43.4% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 41.0 | 4.14e-01 | 79.2% | 96.3% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 4.02e-01 | 94.3% | 76.5% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 49.0 | 3.00e-01 | 100.0% | 26.1% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.55 | 41.0 | 3.78e-01 | 81.1% | 82.4% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.54 | 43.0 | 2.97e-01 | 96.2% | 44.9% |
| 1jr7A00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.54 | 46.0 | 2.91e-01 | 100.0% | 65.4% |
| 6qdjA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 45.0 | 4.06e-01 | 96.2% | 71.1% |
| 1zm7B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.14e-01 | 100.0% | 44.9% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.50 | 45.0 | 3.49e-01 | 100.0% | 46.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943776 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.74 | 52.0 | 3.86e-01 | 73.6% | 31.5% |
| 3824761 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.72 | 55.0 | 5.03e-01 | 84.9% | 62.9% |
| 3473995 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 52.0 | 4.93e-01 | 79.2% | 67.7% |
| 4453525 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.69 | 50.0 | 4.72e-01 | 77.4% | 73.8% |
| 3993192 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.69 | 55.0 | 5.47e-01 | 90.6% | 90.9% |
| 4169323 | 4952.1.1.1 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 | 0.68 | 58.0 | 4.42e-01 | 100.0% | 50.4% |
| 3174900 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.67 | 50.0 | 3.99e-01 | 83.0% | 40.0% |
| 3314379 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.67 | 57.0 | 5.27e-01 | 96.2% | 91.4% |
| 4170537 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.67 | 54.0 | 4.07e-01 | 88.7% | 40.8% |
| 4031914 | 4125.1.1.0 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like | 0.67 | 46.0 | 4.26e-01 | 71.7% | 58.5% |
| 3698416 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.66 | 48.0 | 3.07e-01 | 77.4% | 16.7% |
| None | — | 0.66 | 48.0 | 3.17e-01 | 81.1% | 18.7% | |
| 2822545 | 101.1.8.3 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc | 0.65 | 47.0 | 4.65e-01 | 77.4% | 77.2% |
| 4123225 | 4049.1.1.1 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › CysG_dimeriser | 0.64 | 45.0 | 4.64e-01 | 73.6% | 82.0% |
| 4328219 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.63 | 50.0 | 3.78e-01 | 88.7% | 36.3% |
| 3966675 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 49.0 | 3.19e-01 | 86.8% | 85.4% |
| 4046570 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.61 | 42.0 | 4.13e-01 | 73.6% | 68.3% |
| 3230949 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.61 | 48.0 | 4.31e-01 | 86.8% | 72.0% |
| 3312745 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 47.0 | 3.37e-01 | 90.6% | 65.0% |
| 3372267 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.57 | 45.0 | 4.12e-01 | 100.0% | 64.0% |
| 3378684 | 213.1.1.72 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 | 0.55 | 46.0 | 3.13e-01 | 92.5% | 60.0% |
| 3989233 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.15e-01 | 92.5% | 60.7% |