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AJ972879.2__CCE26197.1__X__00174

Bact-Vir

AJ972879.2__CCE26197.1__X__00174

Identity

Accession:
AJ972879 ↗
Kingdom:
phage

Quality

46.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-106
PDB
D2 high residues 128-169
PDB
D3 high residues 179-275
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.82 69.0 6.58e-01 87.6% 89.1%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.79 57.0 6.45e-01 86.6% 94.7%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.78 67.0 4.50e-01 90.7% 77.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.78 64.0 6.63e-01 86.6% 92.3%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 62.0 6.30e-01 85.6% 93.8%
4k7rA01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.73 49.0 3.35e-01 70.1% 22.2%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 60.0 4.85e-01 89.7% 70.3%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 55.0 5.45e-01 80.4% 77.2%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.71 54.0 5.85e-01 89.7% 96.3%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.71 57.0 5.33e-01 83.5% 93.0%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.70 60.0 5.97e-01 92.8% 90.1%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.70 64.0 4.27e-01 99.0% 35.8%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 60.0 5.59e-01 92.8% 90.0%
1txdA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.69 62.0 4.72e-01 100.0% 78.8%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 59.0 5.00e-01 89.7% 82.0%
2qr4A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.69 58.0 4.95e-01 90.7% 58.3%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 48.0 5.31e-01 90.7% 93.2%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 5.42e-01 84.5% 89.4%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 53.0 4.79e-01 90.7% 60.8%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 50.0 5.02e-01 89.7% 76.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 47.0 5.20e-01 86.6% 91.9%
3smtA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.68 60.0 4.95e-01 93.8% 83.5%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 63.0 4.75e-01 100.0% 58.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 57.0 5.87e-01 91.8% 96.7%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.67 53.0 5.60e-01 87.6% 95.3%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 57.0 5.48e-01 92.8% 82.6%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.66 55.0 5.30e-01 89.7% 100.0%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.65 56.0 5.18e-01 96.9% 78.7%
1xwjA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 52.0 4.74e-01 86.6% 67.7%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 56.0 5.16e-01 92.8% 80.3%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 58.0 4.89e-01 100.0% 74.2%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 52.0 4.90e-01 86.6% 93.2%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 57.0 5.10e-01 100.0% 97.8%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.63 59.0 4.39e-01 97.9% 83.9%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.63 56.0 4.84e-01 96.9% 81.8%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.63 59.0 5.07e-01 100.0% 70.3%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 49.0 4.66e-01 93.8% 70.9%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 50.0 4.96e-01 86.6% 94.1%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 53.0 4.45e-01 91.8% 73.0%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 56.0 4.85e-01 97.9% 88.2%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 51.0 4.60e-01 94.8% 92.0%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 41.0 4.08e-01 70.1% 98.0%
1qkrB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 50.0 4.17e-01 97.9% 67.8%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 52.0 3.56e-01 100.0% 66.1%
5bqnA02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.57 50.0 3.42e-01 100.0% 69.0%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.56 37.0 3.40e-01 95.9% 51.2%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.56 42.0 3.90e-01 81.4% 62.9%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.55 46.0 3.53e-01 91.8% 56.8%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.55 48.0 4.05e-01 99.0% 92.4%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.55 45.0 4.41e-01 86.6% 85.7%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.50 34.0 3.24e-01 87.6% 58.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3650120 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 64.0 4.42e-01 78.4% 87.4%
4076285 3755.1.1.12 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.80 55.0 4.78e-01 70.1% 82.1%
3789420 207.1.1.198 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29247 0.79 74.0 4.48e-01 100.0% 32.6%
3285760 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 70.0 5.56e-01 94.8% 52.8%
3653693 109.4.1.1375 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_SYVN1_N 0.77 72.0 5.34e-01 100.0% 60.9%
3667486 633.7.1.0 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.76 65.0 5.09e-01 88.7% 48.6%
3780807 174.1.1.52 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27925 0.76 67.0 6.02e-01 94.8% 87.7%
3807021 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.76 61.0 4.91e-01 84.5% 61.1%
5062016 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.75 60.0 5.99e-01 84.5% 89.0%
3736648 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.75 67.0 4.27e-01 95.9% 36.1%
5030936 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 52.0 4.08e-01 71.1% 39.0%
3504568 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.75 66.0 5.77e-01 94.8% 91.4%
4021431 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.74 67.0 5.80e-01 94.8% 92.9%
4025554 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 67.0 4.15e-01 96.9% 18.8%
3999040 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.74 66.0 5.37e-01 94.8% 92.4%
3259313 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.74 62.0 5.47e-01 89.7% 71.4%
3173971 630.1.1.2 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF29521 0.74 65.0 5.70e-01 91.8% 96.3%
4017010 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.74 65.0 5.71e-01 94.8% 88.6%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 58.0 4.74e-01 85.6% 81.1%
4019304 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.73 64.0 4.93e-01 93.8% 88.3%
3584415 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 64.0 5.11e-01 94.8% 67.0%
3402390 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.73 63.0 5.55e-01 90.7% 91.9%
3708295 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 64.0 4.36e-01 96.9% 48.8%
4467738 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.72 56.0 5.77e-01 82.5% 88.9%
3280466 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 59.0 4.70e-01 87.6% 79.5%
3737781 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.72 60.0 5.85e-01 89.7% 82.9%
4167714 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.72 67.0 4.72e-01 100.0% 41.5%
3792670 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.71 62.0 5.51e-01 92.8% 91.1%
4369161 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.71 65.0 5.61e-01 95.9% 93.6%
3257366 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.71 65.0 4.82e-01 99.0% 80.0%
3219995 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 61.0 5.25e-01 90.7% 88.3%
3581998 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.71 62.0 5.50e-01 93.8% 91.9%
3585534 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.71 58.0 4.77e-01 88.7% 92.0%
3513855 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.70 65.0 5.58e-01 97.9% 96.6%
3749164 150.3.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 0.70 61.0 4.65e-01 90.7% 56.0%
5012984 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.70 59.0 4.67e-01 90.7% 90.0%
3373648 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.69 59.0 5.08e-01 89.7% 80.0%
3733266 3352.1.1.19 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans2 0.69 61.0 4.01e-01 100.0% 24.2%
3730681 633.10.1.23 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF4267 0.68 57.0 4.91e-01 89.7% 97.3%
3405706 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.67 56.0 5.09e-01 90.7% 88.5%
4935676 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.67 57.0 5.48e-01 92.8% 81.8%
3279209 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 56.0 4.65e-01 95.9% 52.0%
3780808 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.66 58.0 5.34e-01 90.7% 90.7%
4432932 3615.1.1.10 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › TMEM125 0.66 59.0 5.28e-01 97.9% 91.9%
3194871 186.1.1.17 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Arb1 0.65 57.0 5.35e-01 100.0% 78.3%
3279822 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.64 53.0 4.94e-01 88.7% 90.0%
3539619 7015.1.1.1 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.63 54.0 4.71e-01 94.8% 83.3%
4939465 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.59 44.0 4.22e-01 79.4% 73.9%