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AJ972879.2__CCE26264.1__X__00242

Bact-Vir

AJ972879.2__CCE26264.1__X__00242

Identity

Accession:
AJ972879 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_phiR1-37

TaxID: 331278

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 122-136_185-321_350-361_458-475
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.57 34.0 4.22e-01 87.4% 96.4%
5ip4E00 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.56 24.0 3.31e-01 87.9% 79.8%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 23.0 2.71e-01 90.7% 53.1%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.51 18.0 2.85e-01 73.6% 85.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029229 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.50 16.0 2.96e-01 89.6% 100.0%
D2 medium residues 322-349_362-457
PDB
Domain cluster: rep: Salt_Pond_R2_C_D2_MG_scaffold_7_prodigal-single.1__X__X__00111__D133-251
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.63 36.0 4.14e-01 81.5% 75.3%
3w6sC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.50e-01 83.1% 73.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 38.0 3.52e-01 79.8% 97.0%