AJ972879.2CCE26299.1X__00277

Bact-Vir

AJ972879.2__CCE26299.1__X__00277

Identity

92.0 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_phiR1-37

TaxID: 331278

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 153-252

PDB

Domain cluster: rep: pre4_saliva_scaffold_3_prodigal-single.1__X__X__00194__D130-206

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4qclA05	1.10.132.60	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain	0.71	65.0	5.43e-01	100.0%	88.7%
3hr0A02	1.20.58.1970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	45.0	3.80e-01	94.0%	58.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4949768	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.75	68.0	5.81e-01	100.0%	89.4%
5035330	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.70	64.0	5.56e-01	100.0%	85.3%

D2 medium residues 1-25_90-152

PDB

Domain cluster: rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00368__D1-20_79-144

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2py5A02	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.79	70.0	5.44e-01	95.5%	77.7%
2gv9B04	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.77	69.0	5.22e-01	96.6%	100.0%
5i4eA01	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.56	29.0	3.65e-01	83.0%	91.3%
3f6zB01	2.40.128.200	Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor	0.56	29.0	3.13e-01	87.5%	57.0%
2eqkA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.55	33.0	3.57e-01	93.2%	69.9%
3ed4A02	3.30.1120.10	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.55	32.0	3.33e-01	88.6%	61.4%
1o5uA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	30.0	3.00e-01	97.7%	52.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3387275	304.25.1.0 ↗	a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain	0.56	39.0	3.14e-01	72.7%	74.1%
3739664	247.1.1.38 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C	0.54	28.0	3.03e-01	95.5%	57.1%
4011825	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.53	35.0	2.56e-01	87.5%	26.2%
3456323	11.1.5.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f	0.52	37.0	3.50e-01	73.9%	89.5%
3515328	10.10.1.0 ↗	beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain)	0.50	37.0	3.56e-01	77.3%	98.0%

D3 medium residues 26-89

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zbhA00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.67	42.0	3.77e-01	100.0%	45.6%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	42.0	4.05e-01	100.0%	58.3%
2zopA00	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.64	50.0	4.16e-01	100.0%	48.2%
2rdcA00	1.10.287.800	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242	0.64	46.0	3.70e-01	78.1%	73.7%
7cm3A01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.63	50.0	3.76e-01	87.5%	80.3%
4mhfA00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.61	52.0	3.44e-01	100.0%	83.4%
7a0hA01	3.30.1140.60	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit	0.57	42.0	3.69e-01	81.2%	97.0%
8eapA01	1.20.5.340	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	41.0	4.21e-01	92.2%	85.0%
4lwsB00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.53	41.0	3.69e-01	92.2%	60.2%
2mgxA00	1.20.940.10	Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18	0.52	40.0	3.31e-01	89.1%	74.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3784740	3712.1.1.1 ↗	a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11	0.76	44.0	4.18e-01	100.0%	49.3%
3957364	605.6.1.2 ↗	alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › MHB	0.67	53.0	5.02e-01	87.5%	74.7%
3725612	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.59	52.0	4.00e-01	100.0%	68.7%
3589846	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.58	47.0	3.40e-01	98.4%	30.5%
3280016	2006.1.1.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase	0.52	43.0	3.17e-01	100.0%	50.7%
3963888	5065.1.1.2 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD	0.51	44.0	2.88e-01	100.0%	57.6%