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AJ972879.2__CCE26303.1__X__00281

Bact-Vir

AJ972879.2__CCE26303.1__X__00281

Identity

Accession:
AJ972879 ↗
Kingdom:
phage

Quality

96.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-117
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19174.6 best DUF5856 79.5 4.50e-22 96.8% 95.8%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3unoE00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 69.0 5.70e-01 100.0% 72.5%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.75 41.0 4.83e-01 84.2% 76.5%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.74 44.0 3.85e-01 100.0% 42.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 43.0 5.27e-01 97.9% 94.8%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.72 47.0 5.54e-01 100.0% 98.5%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 48.0 5.54e-01 100.0% 97.1%
2l6hA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.71 47.0 3.91e-01 97.9% 41.6%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.70 43.0 4.22e-01 100.0% 57.3%
4jvsA01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 43.0 3.94e-01 98.9% 47.6%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 46.0 4.61e-01 97.9% 67.4%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.69 61.0 5.25e-01 97.9% 72.7%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 46.0 4.78e-01 96.8% 73.6%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 49.0 4.79e-01 74.7% 93.2%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 61.0 5.61e-01 98.9% 97.5%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 47.0 4.16e-01 100.0% 51.1%
1lqsL01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 59.0 5.87e-01 98.9% 94.0%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.65 58.0 5.01e-01 97.9% 80.3%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.65 46.0 4.41e-01 100.0% 63.6%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 60.0 5.44e-01 100.0% 76.4%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.65 54.0 5.65e-01 90.5% 100.0%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.65 44.0 4.36e-01 100.0% 66.3%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.65 56.0 4.34e-01 96.8% 79.5%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.65 45.0 4.25e-01 98.9% 59.5%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.64 51.0 4.92e-01 83.2% 87.6%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.63 53.0 5.14e-01 94.7% 100.0%
4i1mB01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 42.0 3.86e-01 100.0% 51.2%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.63 39.0 3.98e-01 98.9% 64.1%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.62 51.0 4.17e-01 90.5% 81.5%
1bbnA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 54.0 4.81e-01 98.9% 69.2%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 43.0 4.04e-01 77.9% 61.1%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.61 50.0 4.94e-01 98.9% 81.4%
1yq3C02 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.60 38.0 3.64e-01 97.9% 55.6%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 43.0 4.37e-01 97.9% 74.5%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.60 45.0 4.36e-01 100.0% 70.6%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 42.0 3.65e-01 77.9% 92.0%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 44.0 4.41e-01 80.0% 99.0%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 50.0 4.73e-01 100.0% 97.4%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.55 38.0 2.44e-01 72.6% 57.3%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 39.0 3.63e-01 97.9% 60.0%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 40.0 3.50e-01 77.9% 64.3%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.53 45.0 3.69e-01 100.0% 71.9%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 39.0 3.72e-01 77.9% 77.0%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 50.0 4.73e-01 100.0% 90.7%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 37.0 3.26e-01 95.8% 51.4%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 35.0 3.17e-01 70.5% 100.0%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.51 35.0 3.52e-01 70.5% 82.8%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 48.0 4.40e-01 100.0% 93.4%
6dewA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 2.97e-01 75.8% 73.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4160609 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.81 43.0 5.79e-01 100.0% 100.0%
3232705 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.71 43.0 4.07e-01 100.0% 50.4%
4942062 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.70 40.0 4.25e-01 100.0% 62.4%
3524429 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 44.0 4.39e-01 96.8% 61.0%
4927364 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.70 48.0 5.45e-01 78.9% 93.2%
4950296 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.69 44.0 3.07e-01 100.0% 20.7%
4024393 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.68 41.0 4.40e-01 97.9% 70.0%
3930480 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.68 61.0 4.77e-01 97.9% 79.5%
3457663 192.29.1.178 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF28703 0.67 43.0 4.16e-01 97.9% 58.1%
3269429 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.67 46.0 4.30e-01 98.9% 58.3%
3233962 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.66 48.0 5.26e-01 87.4% 90.0%
3211434 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.65 58.0 5.00e-01 98.9% 80.0%
3729299 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 46.0 3.90e-01 72.6% 67.1%
5062246 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.65 59.0 5.73e-01 100.0% 89.5%
3356616 632.22.1.67 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 0.64 45.0 4.51e-01 73.7% 88.0%
3510145 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.64 57.0 4.60e-01 96.8% 82.8%
3270445 633.21.1.22 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc 0.64 55.0 5.22e-01 97.9% 97.4%
3214642 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.64 56.0 3.69e-01 100.0% 67.6%
3855165 604.6.1.65 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT, GGA_N-GAT 0.63 45.0 4.02e-01 94.7% 53.8%
3936929 5057.1.1.13 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus 0.63 46.0 3.97e-01 76.8% 71.3%
3399914 3758.1.1.44 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › DUF1397 0.63 54.0 4.16e-01 96.8% 54.5%
3377749 3843.1.1.15 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › ETR1_N 0.62 41.0 4.04e-01 96.8% 63.0%
3277563 603.2.1.2 alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.62 49.0 4.39e-01 83.2% 85.4%
3840190 633.10.1.18 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › THU_Piezo1 0.62 53.0 5.09e-01 93.7% 88.2%
3779522 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.62 41.0 3.91e-01 98.9% 56.5%
4027540 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.61 43.0 3.65e-01 73.7% 68.8%
3907116 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 53.0 4.60e-01 97.9% 98.7%
3222941 5054.1.1.59 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.61 54.0 4.36e-01 98.9% 82.2%
4321864 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.60 51.0 3.49e-01 89.5% 39.2%
3261464 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.60 43.0 4.10e-01 94.7% 63.6%
3464912 192.8.1.359 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641 0.60 36.0 3.69e-01 100.0% 58.9%
3245852 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.60 52.0 3.94e-01 100.0% 94.3%
3886417 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.59 53.0 4.13e-01 97.9% 80.5%
3665770 1026.1.1.4 alpha bundles › Rev protein › Rev protein › Rev protein › Nup84_Nup100 0.58 39.0 3.51e-01 90.5% 50.0%
3659493 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.57 40.0 3.56e-01 100.0% 51.1%
3832044 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.56 41.0 3.88e-01 75.8% 89.6%
3787587 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.55 42.0 4.17e-01 93.7% 76.0%
3516641 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 48.0 3.99e-01 100.0% 55.6%
4927262 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.55 48.0 3.92e-01 100.0% 79.5%
3801688 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 42.0 4.08e-01 92.6% 73.3%
3662103 6155.1.1.7 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › CLPTM1 0.54 39.0 3.86e-01 74.7% 78.0%
4007623 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.54 42.0 4.31e-01 81.1% 93.3%
3419666 601.19.1.26 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF632 0.54 44.0 3.59e-01 88.4% 96.6%
4024444 5068.1.1.1 alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Cytochrom_B_C 0.54 39.0 3.58e-01 75.8% 77.6%
3340102 109.4.1.140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20 0.53 44.0 3.40e-01 89.5% 64.8%
4669161 3812.1.1.16 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › Med12 0.52 46.0 4.03e-01 96.8% 96.4%
4982777 3291.1.1.238 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF7121 0.51 48.0 3.51e-01 100.0% 56.1%
3563504 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 2.96e-01 92.6% 32.2%
3529859 4177.1.1.10 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH 0.50 46.0 3.22e-01 100.0% 70.7%