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AJ972879.2__CCE26350.1__X__00328

Bact-Vir

AJ972879.2__CCE26350.1__X__00328

Identity

Accession:
AJ972879 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_phiR1-37

TaxID: 331278

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-69
PDB
Domain cluster: rep: SRR1747065_scaffold_28_prodigal-single.1__X__X__00069__D7-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00521.27 best DNA_topoisoIV 37.3 2.20e-09 69.5% 9.5%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mhsB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.73 44.0 3.79e-01 81.4% 39.6%
1qqfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 33.0 2.11e-01 100.0% 10.9%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.55 36.0 3.53e-01 81.4% 62.5%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 33.0 2.84e-01 81.4% 35.7%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 35.0 2.26e-01 72.9% 14.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4370976 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.87 79.0 5.70e-01 100.0% 40.0%
2891961 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.86 78.0 6.59e-01 100.0% 66.0%
1165372 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.83 74.0 5.53e-01 100.0% 42.0%
4969077 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 73.0 5.40e-01 100.0% 40.7%
3723176 601.1.2.71 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DUF3176 0.56 48.0 3.56e-01 100.0% 41.9%
3714100 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.55 35.0 3.34e-01 100.0% 51.4%
3613282 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 35.0 2.73e-01 83.1% 27.6%
3969109 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 37.0 2.47e-01 79.7% 75.2%