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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00066

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00066

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-144
PDB
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.91 87.0 8.40e-01 100.0% 98.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.69 55.0 4.13e-01 82.9% 88.3%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.66 49.0 4.71e-01 77.1% 97.5%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 40.0 3.84e-01 100.0% 52.9%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 59.0 4.93e-01 100.0% 100.0%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 48.0 4.18e-01 79.0% 67.1%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 53.0 3.92e-01 91.4% 95.3%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.63 47.0 3.26e-01 78.1% 35.9%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.62 44.0 2.79e-01 73.3% 22.7%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 48.0 3.68e-01 81.0% 87.2%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.83e-01 100.0% 49.7%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 3.98e-01 78.1% 69.4%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 46.0 4.06e-01 79.0% 70.2%
4xl1E01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 4.02e-01 79.0% 73.5%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 47.0 4.30e-01 81.9% 97.1%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 3.97e-01 100.0% 51.5%
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 4.44e-01 100.0% 87.2%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 36.0 3.37e-01 76.2% 49.2%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 47.0 4.07e-01 85.7% 71.6%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.58 51.0 4.96e-01 100.0% 87.2%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.57 48.0 4.18e-01 93.3% 95.7%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 47.0 3.70e-01 88.6% 55.3%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.50e-01 100.0% 42.3%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 48.0 3.62e-01 90.5% 51.4%
1te5A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 41.0 3.13e-01 98.1% 32.0%
4dkmA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 47.0 3.71e-01 90.5% 58.7%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.56 44.0 3.87e-01 87.6% 95.2%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 46.0 3.65e-01 88.6% 56.3%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 40.0 4.03e-01 77.1% 84.3%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 50.0 3.78e-01 100.0% 96.0%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.55 40.0 2.89e-01 76.2% 29.4%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 49.0 4.31e-01 99.0% 100.0%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 46.0 3.62e-01 90.5% 57.9%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.99e-01 100.0% 96.5%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 44.0 3.64e-01 85.7% 88.0%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 42.0 3.51e-01 82.9% 86.5%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.23e-01 100.0% 98.1%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.54 40.0 3.15e-01 80.0% 52.8%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 43.0 2.71e-01 85.7% 39.3%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 47.0 4.21e-01 100.0% 97.4%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 4.21e-01 100.0% 75.4%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.53 48.0 3.52e-01 100.0% 66.8%
2p6cA00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.53 48.0 4.40e-01 100.0% 100.0%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 2.98e-01 81.0% 48.4%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.53 47.0 3.32e-01 98.1% 98.4%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.52 47.0 3.80e-01 100.0% 98.0%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 4.00e-01 97.1% 98.0%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 3.83e-01 75.2% 84.2%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.44e-01 100.0% 65.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 47.0 4.28e-01 100.0% 97.1%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.54e-01 96.2% 99.5%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 41.0 2.83e-01 86.7% 27.7%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 38.0 2.95e-01 80.0% 98.8%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 43.0 2.89e-01 91.4% 46.6%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.67e-01 100.0% 98.5%
3aapA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 36.0 3.39e-01 72.4% 99.2%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 37.0 3.32e-01 76.2% 69.7%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.51 45.0 4.14e-01 99.0% 81.5%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.50 43.0 3.85e-01 96.2% 76.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441034 3386.1.1.4 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C 0.91 87.0 8.22e-01 100.0% 93.3%
2512673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 68.0 6.38e-01 100.0% 78.6%
1548777 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.69 55.0 4.13e-01 82.9% 88.3%
3946522 9.1.1.36 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.66 52.0 4.53e-01 82.9% 92.3%
2410193 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.66 47.0 5.36e-01 100.0% 100.0%
3736128 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.65 48.0 3.60e-01 77.1% 52.3%
3650579 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.64 46.0 4.27e-01 77.1% 98.6%
4362579 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.64 50.0 4.17e-01 81.9% 96.0%
3975660 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.63 46.0 3.69e-01 77.1% 95.8%
4294796 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.63 48.0 4.11e-01 81.9% 97.6%
4498349 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.62 48.0 4.01e-01 81.9% 84.4%
3233723 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.62 46.0 4.55e-01 78.1% 75.5%
4136961 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.62 47.0 3.99e-01 81.0% 97.7%
3485933 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.62 44.0 4.09e-01 75.2% 65.2%
4500128 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.60 44.0 2.84e-01 76.2% 20.2%
3220160 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.02e-01 78.1% 98.6%
3373176 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.59 43.0 3.97e-01 77.1% 98.6%
1121 10.32.1.35 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YpM 0.58 51.0 4.96e-01 100.0% 87.2%
4966023 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 53.0 4.99e-01 100.0% 96.8%
5015520 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 45.0 3.60e-01 82.9% 90.5%
3252445 11.2.1.19 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.57 42.0 3.28e-01 79.0% 50.4%
4992294 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.57 50.0 3.88e-01 100.0% 69.6%
5038687 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 49.0 5.03e-01 100.0% 99.0%
5042811 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 50.0 4.81e-01 100.0% 96.6%
4604481 12.3.1.8 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.56 42.0 3.28e-01 79.0% 53.8%
3519566 10.32.1.230 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_N 0.56 50.0 4.65e-01 100.0% 94.8%
3599776 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 49.0 4.78e-01 100.0% 97.5%
5040234 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 50.0 4.88e-01 100.0% 93.0%
3946102 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.55 39.0 2.64e-01 74.3% 21.4%
3980621 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.55 49.0 3.84e-01 97.1% 100.0%
3705932 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.24e-01 95.2% 92.0%
3165307 5084.5.4.1 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.54 46.0 3.11e-01 95.2% 98.6%
3995219 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.17e-01 98.1% 78.0%
3976425 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.54 44.0 3.54e-01 88.6% 77.6%
3185314 10.1.1.16 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.54 43.0 3.49e-01 88.6% 81.8%
5027268 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 4.18e-01 100.0% 89.7%
3519720 5084.8.1.3 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher_TcfC 0.53 44.0 2.94e-01 92.4% 36.3%
5012521 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 46.0 3.58e-01 97.1% 98.7%
4294583 10.2.1.31 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.53 48.0 4.59e-01 100.0% 97.5%
4292366 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.53 45.0 3.77e-01 93.3% 94.0%
3963175 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.53 47.0 3.94e-01 100.0% 90.3%
4022742 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.53 39.0 3.59e-01 81.0% 89.3%
4978633 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.52 42.0 3.81e-01 89.5% 97.3%
4021014 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.60e-01 75.2% 93.5%
3839285 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.52 46.0 3.88e-01 100.0% 97.8%
1839958 12.1.1.23 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.52 44.0 4.22e-01 100.0% 80.8%
4010676 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 39.0 2.63e-01 89.5% 20.2%
3179462 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.52 44.0 3.88e-01 92.4% 89.6%
4295345 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.52 40.0 3.64e-01 86.7% 91.6%
4349091 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 43.0 2.96e-01 93.3% 37.3%
3216801 5.1.2.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.52 46.0 3.24e-01 98.1% 97.0%
3974176 5084.8.1.0 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.51 42.0 2.86e-01 93.3% 34.9%
185765 5084.5.1.13 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 0.51 38.0 2.95e-01 80.0% 98.8%
4008074 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 42.0 2.79e-01 90.5% 27.1%
5033918 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.51 44.0 3.72e-01 97.1% 97.2%
4010814 12.3.1.8 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.50 40.0 3.01e-01 86.7% 76.1%
4281349 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.50 42.0 2.82e-01 91.4% 28.0%
3278805 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.50 43.0 3.85e-01 92.4% 77.2%
3662305 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 39.0 2.74e-01 82.9% 39.7%