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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00110

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00110

Identity

Kingdom:
phage

Quality

92.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-66
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ezrA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.53 38.0 2.57e-01 81.8% 95.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4101844 2003.1.1.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N 0.56 34.0 2.64e-01 100.0% 26.0%
D2 medium residues 67-213_425-441
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 39.0 3.65e-01 86.6% 44.3%
4obxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 41.0 3.63e-01 84.1% 42.6%
1vjtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 33.0 3.82e-01 90.2% 68.1%
3nd5A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 33.0 3.46e-01 93.9% 52.6%
5x7fA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 37.0 3.54e-01 86.6% 47.5%
4qdiA03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.63 42.0 4.43e-01 100.0% 76.2%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 36.0 4.25e-01 72.0% 82.6%
1qhhA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 35.0 3.54e-01 86.0% 54.3%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.61 48.0 4.82e-01 97.0% 81.1%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 54.0 4.48e-01 95.7% 99.3%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.61 51.0 4.18e-01 89.6% 88.9%
5f1yA02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.60 45.0 4.41e-01 96.3% 71.9%
7zp2C02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.59 36.0 3.76e-01 80.5% 63.5%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 34.0 3.56e-01 98.8% 60.4%
1gzjA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 52.0 4.24e-01 97.6% 64.5%
1vbkA03 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 31.0 3.43e-01 94.5% 61.7%
1gg4A01 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.58 38.0 4.07e-01 100.0% 78.7%
3nvaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 4.16e-01 97.0% 92.0%
4oo3A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 31.0 3.32e-01 94.5% 59.3%
3gfzB02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.55 47.0 4.08e-01 91.5% 77.2%
2xsaA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 49.0 4.17e-01 98.2% 83.4%
3k13A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.55 49.0 4.01e-01 94.5% 54.5%
3c6cA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 50.0 4.14e-01 100.0% 75.9%
3p94A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 50.0 4.68e-01 100.0% 90.7%
5i9eA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 34.0 4.05e-01 86.0% 91.1%
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 49.0 4.55e-01 100.0% 98.6%
1zlpA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 49.0 4.06e-01 98.2% 71.8%
3cb2B01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.54 47.0 4.04e-01 95.1% 94.7%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 33.0 3.08e-01 89.6% 44.7%
5lqdD01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 48.0 4.27e-01 98.8% 100.0%
1qwjB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 32.0 2.92e-01 94.5% 41.9%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 39.0 3.60e-01 87.2% 56.7%
1jbkA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 3.61e-01 87.8% 60.8%
2im5A00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.53 42.0 3.24e-01 84.8% 70.2%
4acyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 47.0 3.78e-01 98.8% 69.2%
3mkkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 48.0 3.65e-01 100.0% 86.2%
3b9oA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.53 47.0 3.53e-01 100.0% 75.3%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.52 34.0 3.91e-01 96.3% 89.8%
2yr1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 4.00e-01 96.3% 73.2%
1zbsA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 28.0 3.52e-01 89.6% 86.5%
1fnnA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 3.66e-01 72.6% 89.1%
6p0wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 31.0 3.46e-01 70.7% 72.6%
8balC01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 46.0 3.71e-01 97.6% 74.9%
1vlpA00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.51 41.0 3.11e-01 85.4% 69.4%
1sfjB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 4.06e-01 97.6% 80.3%
3kxqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 3.93e-01 94.5% 66.2%
3ca8A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 35.0 3.66e-01 81.1% 74.8%
1j5pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 4.08e-01 93.9% 96.2%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 46.0 3.43e-01 100.0% 67.6%
4mupB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 46.0 3.82e-01 100.0% 62.2%
3no3A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.50 45.0 4.00e-01 98.2% 81.5%
7wj9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 44.0 3.65e-01 98.8% 89.1%
3k50A03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 45.0 4.38e-01 98.2% 94.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4339753 2003.1.5.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.69 41.0 3.73e-01 87.8% 44.2%
4015501 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 41.0 3.60e-01 89.6% 43.9%
3495698 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.60 44.0 4.49e-01 95.1% 77.6%
4854841 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.59 41.0 4.01e-01 70.7% 92.3%
5061803 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.59 47.0 4.17e-01 96.3% 59.0%
5053388 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.59 41.0 3.37e-01 89.0% 37.7%
4029106 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.59 44.0 3.62e-01 88.4% 42.7%
3424987 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.59 39.0 3.78e-01 70.7% 60.0%
4014271 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.58 53.0 4.45e-01 100.0% 93.5%
3704377 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.58 44.0 3.60e-01 98.8% 44.1%
4963584 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.57 33.0 3.44e-01 98.2% 58.4%
3787930 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.57 47.0 3.94e-01 87.8% 52.7%
3954855 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.56 40.0 3.91e-01 94.5% 65.4%
3594528 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 50.0 4.17e-01 97.6% 95.1%
4220781 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.56 44.0 3.90e-01 96.3% 58.1%
4997386 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 42.0 3.77e-01 95.1% 56.2%
3274753 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 50.0 3.75e-01 98.8% 79.8%
3744130 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.55 48.0 4.38e-01 95.7% 72.7%
3901473 2003.1.4.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.55 46.0 4.20e-01 92.1% 92.4%
3878551 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.54 47.0 4.38e-01 93.3% 79.5%
3839820 2002.1.1.67 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.54 49.0 3.77e-01 100.0% 71.2%
3736142 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 48.0 3.24e-01 100.0% 44.5%
5057081 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.53 41.0 4.44e-01 99.4% 95.7%
3633743 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.53 48.0 3.83e-01 100.0% 86.3%
3724920 7514.1.1.3 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.52 42.0 4.02e-01 98.2% 73.2%
4627252 7589.1.1.2 a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.52 43.0 4.27e-01 95.7% 84.1%
5075923 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.52 47.0 3.74e-01 98.8% 52.4%
4505098 2008.1.1.149 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 0.52 40.0 4.34e-01 96.3% 96.4%
None 0.51 39.0 3.61e-01 79.3% 76.2%
3888613 2003.1.6.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.51 46.0 3.93e-01 99.4% 99.6%
3689761 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.51 45.0 3.44e-01 97.6% 93.2%
2538881 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.51 45.0 4.03e-01 97.6% 85.7%
3513731 2007.1.20.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › GD_AH_second 0.51 36.0 3.91e-01 94.5% 86.4%
5052615 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 44.0 4.11e-01 95.7% 89.0%
4010009 2003.1.1.89 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GD_AH_second 0.51 36.0 3.90e-01 94.5% 86.4%
3783189 2003.1.5.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.51 43.0 3.72e-01 93.3% 81.5%
3798500 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 44.0 3.33e-01 96.3% 95.2%
3172913 2008.1.1.149 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 0.50 40.0 4.15e-01 97.0% 90.7%
3947738 2007.1.13.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › GD_AH_second 0.50 36.0 3.86e-01 94.5% 85.7%
3634121 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.50 43.0 3.26e-01 95.7% 38.0%
3203116 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.50 43.0 3.24e-01 95.7% 37.5%
D3 medium residues 214-306
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 61.0 4.84e-01 100.0% 82.5%
3cf4A02 3.40.50.2030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 45.0 3.52e-01 100.0% 36.2%
2x5jQ01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 51.0 4.24e-01 98.9% 66.9%
3pnxA00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.57 47.0 4.03e-01 94.6% 88.1%
4a91A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 40.0 3.48e-01 76.3% 86.2%
1ihuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.51e-01 100.0% 82.4%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 34.0 2.92e-01 100.0% 36.3%
2c2xA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 32.0 2.76e-01 100.0% 33.8%
3vywA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 47.0 3.60e-01 98.9% 51.1%
2qs7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.54 45.0 4.03e-01 94.6% 89.1%
1iirA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 46.0 3.64e-01 100.0% 94.1%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 48.0 4.00e-01 98.9% 79.5%
1lqtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 3.11e-01 98.9% 35.3%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 2.86e-01 97.8% 38.9%
2h0aA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 27.0 2.61e-01 100.0% 39.3%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 43.0 3.99e-01 100.0% 71.9%
3eeqA01 3.40.50.11220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 32.0 2.99e-01 88.2% 48.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3664893 7512.1.1.67 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28+EryCIII-like_C 0.58 51.0 3.33e-01 100.0% 94.5%
3696455 7512.1.1.10 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.58 49.0 3.18e-01 98.9% 49.4%
3236721 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.58 50.0 3.69e-01 100.0% 98.9%
4941573 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 40.0 3.25e-01 98.9% 36.8%
3231581 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.56 47.0 3.36e-01 93.5% 87.8%
4991425 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.56 47.0 4.08e-01 94.6% 89.3%
5020660 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.56 41.0 3.33e-01 97.8% 39.5%
4996429 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 41.0 3.32e-01 97.8% 38.9%
5020608 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 43.0 3.41e-01 98.9% 40.5%
4985730 7545.1.1.0 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like 0.54 42.0 3.88e-01 87.1% 91.5%
5071350 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.54 46.0 4.12e-01 98.9% 93.6%
4015852 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.54 46.0 3.12e-01 100.0% 66.3%
4982083 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.54 45.0 4.01e-01 93.5% 88.1%
5008349 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.53 42.0 3.87e-01 87.1% 92.8%
3576096 2007.1.4.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.53 40.0 3.44e-01 79.6% 82.0%
5051906 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.53 45.0 3.99e-01 93.5% 88.9%
3230423 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.53 45.0 3.57e-01 96.8% 55.6%
5034981 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.53 44.0 3.98e-01 94.6% 89.5%
3514950 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.52 46.0 3.92e-01 98.9% 77.3%
3960088 4126.1.1.5 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 0.51 35.0 3.09e-01 71.0% 58.6%
5024506 7545.1.1.3 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.51 42.0 3.88e-01 100.0% 94.8%
D4 medium residues 307-424
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ygpA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.68 61.0 4.36e-01 98.3% 97.4%
2acvA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 53.0 4.53e-01 99.2% 53.5%
4zciA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 49.0 4.33e-01 82.2% 67.8%
4ac9C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 4.21e-01 85.6% 58.5%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 36.0 4.25e-01 78.0% 87.3%
2nzwA01 3.40.50.11660 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycosyl transferase family 10, C-terminal domain 0.60 55.0 4.48e-01 100.0% 75.5%
4n6fA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 41.0 3.25e-01 70.3% 50.8%
1mkyA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 4.24e-01 83.9% 62.8%
1n0uA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 45.0 3.78e-01 83.1% 60.0%
4ms4B01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 46.0 3.81e-01 87.3% 84.2%
2y6pB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 40.0 3.20e-01 70.3% 36.9%
4ydrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 45.0 4.08e-01 84.7% 65.3%
3b5vA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 42.0 3.34e-01 78.8% 66.0%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 44.0 3.34e-01 85.6% 50.7%
3l23A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 44.0 3.37e-01 85.6% 70.9%
1pujA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 3.96e-01 85.6% 62.8%
4gnrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 45.0 3.82e-01 89.0% 57.7%
4relA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 48.0 4.24e-01 98.3% 97.2%
1v5xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 40.0 3.40e-01 78.8% 80.0%
2ogwA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 38.0 3.61e-01 77.1% 67.6%
5e97A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 38.0 3.01e-01 74.6% 70.6%
2atcA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.51 37.0 3.45e-01 77.1% 74.5%
1vjrA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 37.0 3.43e-01 77.1% 60.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947095 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.75 60.0 5.17e-01 100.0% 55.0%
4974681 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.75 58.0 4.97e-01 98.3% 51.9%
5045032 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.74 56.0 4.91e-01 94.1% 53.7%
4839687 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.74 52.0 5.03e-01 86.4% 64.9%
4001147 7512.1.1.18 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.74 64.0 5.42e-01 99.2% 57.9%
4987823 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.72 61.0 5.25e-01 100.0% 58.4%
4941348 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.72 59.0 4.95e-01 100.0% 53.3%
5055575 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.71 55.0 4.73e-01 100.0% 51.9%
5078209 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.67 55.0 4.69e-01 100.0% 55.3%
3256319 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.67 58.0 5.11e-01 99.2% 65.3%
5059029 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.66 60.0 4.68e-01 100.0% 50.8%
5038022 7512.1.1.61 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_2 0.64 59.0 5.09e-01 100.0% 97.8%
4946683 7512.1.1.32 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.63 58.0 4.98e-01 100.0% 97.3%
3664750 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.63 57.0 4.74e-01 100.0% 84.9%
4972770 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.62 56.0 4.75e-01 100.0% 92.8%
3719242 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.62 55.0 4.74e-01 100.0% 63.2%
3593213 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 55.0 4.65e-01 99.2% 65.5%
3263799 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.61 46.0 4.40e-01 82.2% 69.6%
4988371 2003.1.1.43 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_3 0.61 46.0 4.09e-01 81.4% 55.4%
5029762 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.60 54.0 4.72e-01 99.2% 100.0%
4934582 2003.1.1.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ELFV_dehydrog 0.59 43.0 3.88e-01 83.9% 53.5%
5078185 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.59 52.0 4.57e-01 100.0% 98.3%
5079730 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.58 52.0 4.61e-01 100.0% 98.9%
3311242 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.58 40.0 4.25e-01 72.0% 93.3%
None 0.57 36.0 3.85e-01 76.3% 72.8%
3517188 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 3.27e-01 82.2% 42.9%
3187151 2003.1.5.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 0.54 39.0 3.32e-01 76.3% 48.7%
4982920 7512.1.1.62 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_3 0.51 38.0 3.21e-01 81.4% 97.8%