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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00123
Bact-VirALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00123
Identity
- Kingdom:
- phage
Quality
96.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-108
Domain cluster:
rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00139__D5-107
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w8kA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 49.0 | 3.92e-01 | 100.0% | 70.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971265 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.58 | 41.0 | 3.19e-01 | 73.5% | 69.1% |
| 3440506 | 109.4.1.541 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4220 | 0.51 | 44.0 | 3.26e-01 | 91.8% | 66.7% |
| 4309233 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 36.0 | 4.00e-01 | 98.0% | 98.7% |
| 3287570 | 2003.1.2.111 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Lys_Orn_oxgnase | 0.51 | 33.0 | 2.84e-01 | 93.9% | 37.7% |
D2
high
residues 119-316
Domain cluster:
rep: IMGVR_UViG_3300035145_002450-3300035145-Ga0373595_0009153_3868_5049__D175-392
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dzgA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 32.0 | 4.15e-01 | 88.9% | 87.6% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 32.0 | 4.00e-01 | 89.9% | 85.5% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 35.0 | 4.36e-01 | 94.9% | 96.6% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 36.0 | 4.32e-01 | 89.9% | 93.2% |
| 4m01A02 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.57 | 23.0 | 3.50e-01 | 89.4% | 90.9% |
| 2wq4A01 | 2.60.120.760 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 37.0 | 4.39e-01 | 89.9% | 99.2% |
| 1stmA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.56 | 36.0 | 4.24e-01 | 94.9% | 91.5% |
| 1cwpA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.55 | 36.0 | 4.12e-01 | 95.5% | 87.9% |
| 6gh3A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.55 | 46.0 | 3.84e-01 | 87.9% | 77.8% |
| 4yarA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 24.0 | 2.94e-01 | 88.4% | 61.8% |
| 2w07B01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.54 | 31.0 | 3.92e-01 | 92.4% | 95.7% |
| 3zn4A00 | 2.60.120.1180 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 35.0 | 3.92e-01 | 100.0% | 87.2% |
| 4ia5A02 | 3.30.9.80 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.52 | 33.0 | 3.88e-01 | 95.5% | 87.5% |
| 2a5zA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.71e-01 | 100.0% | 63.6% |
| 1sezA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.52 | 29.0 | 3.05e-01 | 94.4% | 57.3% |
| 1gff200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 35.0 | 3.72e-01 | 100.0% | 77.4% |
| 2durB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 4.08e-01 | 100.0% | 77.3% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 30.0 | 3.64e-01 | 76.8% | 91.8% |
| 4jqtA01 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.51 | 39.0 | 3.91e-01 | 100.0% | 78.1% |
| 1p97A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 29.0 | 3.64e-01 | 74.7% | 94.7% |
| 7clyA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 37.0 | 3.88e-01 | 75.3% | 99.4% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.50 | 41.0 | 3.74e-01 | 87.4% | 72.5% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 37.0 | 3.87e-01 | 95.5% | 81.4% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930609 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.74 | 38.0 | 4.47e-01 | 100.0% | 69.3% |
| 4025374 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.72 | 38.0 | 4.68e-01 | 100.0% | 80.0% |
| 2323933 | 10.32.1.58 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BPA_C | 0.66 | 34.0 | 4.17e-01 | 100.0% | 75.8% |
| 4403193 | 10.32.1.244 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 | 0.65 | 38.0 | 4.79e-01 | 98.5% | 95.8% |
| 5035505 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.64 | 38.0 | 4.80e-01 | 98.5% | 98.3% |
| 3701082 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.64 | 36.0 | 4.22e-01 | 72.2% | 75.7% |
| 3690068 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.64 | 31.0 | 3.92e-01 | 100.0% | 75.0% |
| 3282038 | 10.2.1.48 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF2961 | 0.62 | 44.0 | 4.74e-01 | 100.0% | 85.5% |
| 1014044 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.62 | 43.0 | 4.55e-01 | 100.0% | 78.5% |
| 3215810 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 38.0 | 4.53e-01 | 100.0% | 89.6% |
| 4997740 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.62 | 38.0 | 4.45e-01 | 86.9% | 86.4% |
| 3601399 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 40.0 | 4.07e-01 | 100.0% | 65.5% |
| 3173730 | 222.1.1.27 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 | 0.61 | 26.0 | 2.99e-01 | 78.8% | 51.0% |
| 3206484 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 39.0 | 4.69e-01 | 100.0% | 97.7% |
| 3626422 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 42.0 | 4.73e-01 | 100.0% | 94.0% |
| 3481772 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.59 | 32.0 | 3.98e-01 | 92.4% | 84.6% |
| 4026379 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.58 | 39.0 | 4.40e-01 | 83.8% | 88.0% |
| 2100899 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 43.0 | 4.68e-01 | 100.0% | 93.2% |
| 3821106 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 35.0 | 3.82e-01 | 90.4% | 70.6% |
| 3698953 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.57 | 38.0 | 4.51e-01 | 100.0% | 96.4% |
| 3724772 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 39.0 | 4.51e-01 | 100.0% | 98.6% |
| 3620795 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.56 | 33.0 | 3.74e-01 | 83.3% | 75.3% |
| 4015802 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 32.0 | 4.11e-01 | 93.4% | 99.1% |
| 2772578 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.55 | 35.0 | 4.14e-01 | 100.0% | 90.0% |
| 5009477 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 30.0 | 3.96e-01 | 99.5% | 98.1% |
| 5010985 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.54 | 50.0 | 4.41e-01 | 100.0% | 78.6% |
| 2388378 | 12.3.1.12 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 | 0.54 | 45.0 | 3.90e-01 | 87.9% | 82.0% |
| 3488907 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.53 | 40.0 | 4.41e-01 | 99.5% | 95.0% |
| 3715178 | 10.32.1.31 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C | 0.53 | 34.0 | 4.01e-01 | 100.0% | 94.1% |
| 3177725 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 44.0 | 4.02e-01 | 88.4% | 82.0% |
| 3273661 | 12.3.1.46 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD | 0.52 | 44.0 | 4.19e-01 | 88.9% | 77.9% |
| 3420462 | 331.3.1.1 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 | 0.52 | 39.0 | 4.39e-01 | 88.4% | 100.0% |
| 4958335 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 38.0 | 4.08e-01 | 99.5% | 87.9% |
| 3567303 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.52 | 39.0 | 4.31e-01 | 100.0% | 95.6% |
| 5029448 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 39.0 | 4.33e-01 | 90.9% | 96.2% |
| 3401959 | 10.1.1.19 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like | 0.52 | 43.0 | 4.06e-01 | 100.0% | 72.2% |
| 4936909 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 43.0 | 4.55e-01 | 94.9% | 97.2% |
| 4958145 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.52 | 33.0 | 3.06e-01 | 79.8% | 47.5% |
| 3536617 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.51 | 31.0 | 3.69e-01 | 76.8% | 88.5% |
| 4949862 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 32.0 | 3.67e-01 | 79.8% | 83.4% |
| 4380019 | 10.32.1.94 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CDC50 | 0.51 | 37.0 | 4.06e-01 | 100.0% | 91.4% |
| 30827 | 10.2.1.27 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Phage_G | 0.51 | 35.0 | 3.72e-01 | 100.0% | 77.4% |
| 296002 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.51 | 38.0 | 3.91e-01 | 95.5% | 78.8% |
| 4958190 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 43.0 | 3.54e-01 | 87.4% | 89.7% |
| 4962578 | 10.1.2.198 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF7383 | 0.51 | 32.0 | 3.83e-01 | 92.9% | 95.4% |
| 3914739 | 223.1.1.78 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC | 0.51 | 38.0 | 3.79e-01 | 77.3% | 99.0% |
| 4958282 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.50 | 42.0 | 3.45e-01 | 87.4% | 81.7% |
| 3781073 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.50 | 34.0 | 3.98e-01 | 94.4% | 97.9% |