←Back to structures
ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00130
Bact-VirALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00130
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-90
Domain cluster:
rep: SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00203__D27-110
D2
high
residues 115-262_361-405
Domain cluster:
rep: IMGVR_UViG_3300020462_000806-3300020462-Ga0211546_100098272__D14-123_230-270
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27647.1 best | DUF8360 | 129.1 | 2.80e-37 | 77.7% | 50.7% |
D3
high
residues 415-460_930-993
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00171__D292-345_597-647
D4
medium
residues 91-108_280-350
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27647.1 best | DUF8360 | 51.6 | 1.20e-13 | 89.9% | 25.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2plqA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.57 | 41.0 | 2.88e-01 | 79.8% | 70.6% |
| 3gw6A03 | 3.30.2460.10 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain | 0.56 | 26.0 | 3.11e-01 | 80.9% | 61.4% |
| 1ewqB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.53 | 37.0 | 3.43e-01 | 73.0% | 86.4% |
| 7ahhC02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 37.0 | 3.60e-01 | 75.3% | 71.4% |
| 1zejA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 36.0 | 3.04e-01 | 71.9% | 81.0% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 38.0 | 3.76e-01 | 76.4% | 89.6% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 30.0 | 3.48e-01 | 75.3% | 86.0% |
| 3gwmA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.51 | 37.0 | 3.32e-01 | 78.7% | 93.8% |
| 4dqwA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 35.0 | 3.36e-01 | 76.4% | 91.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1395964 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.57 | 41.0 | 2.86e-01 | 78.7% | 70.4% |
| 4118497 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.57 | 41.0 | 2.90e-01 | 78.7% | 75.0% |
| 4855695 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 38.0 | 3.02e-01 | 75.3% | 68.8% |
| 3164272 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 38.0 | 3.30e-01 | 79.8% | 67.3% |
| 5073123 | 2008.5.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C | 0.52 | 39.0 | 3.43e-01 | 83.1% | 80.7% |
| 3320346 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.51 | 35.0 | 2.40e-01 | 73.0% | 60.6% |
| 4939609 | 2008.5.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C | 0.50 | 38.0 | 3.40e-01 | 83.1% | 82.2% |
| 3229238 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.50 | 37.0 | 2.85e-01 | 80.9% | 89.6% |
D5
medium
residues 461-483_729-823
Domain cluster:
rep: IMGVR_UViG_3300020462_000806-3300020462-Ga0211546_100098272__D343-355_594-694
D6
medium
residues 484-533_644-728
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 32.0 | 3.77e-01 | 100.0% | 67.4% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 32.0 | 3.88e-01 | 98.5% | 73.9% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.61 | 31.0 | 3.58e-01 | 97.8% | 66.3% |
| 5f1sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 31.0 | 3.49e-01 | 99.3% | 63.7% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.58 | 30.0 | 3.67e-01 | 99.3% | 77.9% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.56 | 29.0 | 3.34e-01 | 100.0% | 67.0% |
| 3encA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.56 | 26.0 | 3.31e-01 | 100.0% | 73.4% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.54 | 31.0 | 3.56e-01 | 100.0% | 78.7% |
| 3u3lC00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.53 | 39.0 | 3.28e-01 | 90.4% | 45.2% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 29.0 | 3.18e-01 | 100.0% | 66.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970335 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.64 | 32.0 | 3.77e-01 | 99.3% | 67.8% |
| 3834748 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.64 | 32.0 | 3.74e-01 | 100.0% | 66.3% |
| 5040231 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.64 | 31.0 | 3.57e-01 | 99.3% | 61.0% |
| 4026677 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.63 | 32.0 | 3.69e-01 | 100.0% | 64.0% |
| 5004754 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.61 | 35.0 | 3.80e-01 | 100.0% | 65.2% |
| 1005415 | 304.112.1.7 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Aa-Ago_N | 0.60 | 24.0 | 3.05e-01 | 99.3% | 59.2% |
| 5077552 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.59 | 30.0 | 3.46e-01 | 99.3% | 66.3% |
| 4571276 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.58 | 28.0 | 3.45e-01 | 98.5% | 73.8% |
| 5013852 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.54 | 27.0 | 3.21e-01 | 100.0% | 70.6% |
D7
medium
residues 824-929
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l8jA01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.53 | 31.0 | 3.20e-01 | 77.4% | 60.2% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 38.0 | 2.83e-01 | 76.4% | 78.2% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.52 | 28.0 | 3.38e-01 | 86.8% | 81.8% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 25.0 | 3.06e-01 | 76.4% | 70.8% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 38.0 | 2.59e-01 | 79.2% | 95.6% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 38.0 | 3.91e-01 | 80.2% | 83.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225256 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.65 | 27.0 | 2.86e-01 | 86.8% | 42.1% |
| 4563436 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.64 | 26.0 | 3.42e-01 | 80.2% | 64.4% |
| 3838513 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 38.0 | 3.07e-01 | 72.6% | 92.0% |
| 3486200 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 38.0 | 2.51e-01 | 70.8% | 66.1% |
| 4486024 | 4004.1.1.10 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 | 0.53 | 41.0 | 3.45e-01 | 84.0% | 96.8% |
| 3516794 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 40.0 | 3.60e-01 | 80.2% | 60.7% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.51 | 31.0 | 2.51e-01 | 84.0% | 30.7% |
| 3970954 | 221.1.1.1 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 | 0.51 | 29.0 | 3.13e-01 | 84.0% | 65.6% |
| 3511356 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.50 | 38.0 | 3.81e-01 | 79.2% | 92.4% |
| 5028191 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.50 | 25.0 | 2.84e-01 | 82.1% | 60.0% |
| 3582576 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.50 | 34.0 | 2.52e-01 | 71.7% | 63.9% |
D8
medium
residues 1002-1118
Domain cluster:
rep: ON453901.1__WAK79552.1__X__00025__D265-358
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4s2rQ03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.60 | 45.0 | 3.37e-01 | 78.6% | 58.9% |
| 3e6qA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 40.0 | 3.93e-01 | 71.8% | 90.5% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 4.06e-01 | 77.8% | 100.0% |
| 1kvdB00 | 3.30.44.10 | Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain | 0.51 | 32.0 | 3.70e-01 | 90.6% | 94.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957578 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.86 | 62.0 | 7.06e-01 | 93.2% | 96.7% |
| 3977755 | 3228.1.1.2 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C | 0.80 | 56.0 | 6.43e-01 | 93.2% | 98.8% |
| 5004557 | 3228.1.1.0 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III | 0.72 | 63.0 | 6.52e-01 | 94.0% | 98.2% |
| 3313414 | 229.1.1.7 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N | 0.71 | 53.0 | 5.97e-01 | 92.3% | 100.0% |
| 3209734 | 229.1.1.7 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N | 0.64 | 48.0 | 5.26e-01 | 91.5% | 95.8% |
| 3652467 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.58 | 43.0 | 4.44e-01 | 89.7% | 83.6% |
| 3740395 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.53 | 42.0 | 4.46e-01 | 94.0% | 96.2% |
| 3638065 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.52 | 39.0 | 3.78e-01 | 79.5% | 92.6% |