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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00202
Bact-VirALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00202
Identity
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-62
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rq4A01 | 1.10.10.1700 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Histone-lysine N-methyltransferase | 0.60 | 41.0 | 3.47e-01 | 76.4% | 40.8% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 36.0 | 2.83e-01 | 70.9% | 56.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4214196 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.83 | 74.0 | 4.95e-01 | 100.0% | 27.8% |
| 3400645 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.82 | 72.0 | 4.71e-01 | 98.2% | 24.0% |
| 4120463 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.82 | 72.0 | 4.71e-01 | 98.2% | 25.3% |
| 4192213 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.80 | 70.0 | 4.62e-01 | 100.0% | 25.3% |
| 4370767 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.75 | 64.0 | 4.31e-01 | 100.0% | 25.9% |
| 3728434 | 2003.1.1.143 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA, NAD_binding_10 | 0.63 | 55.0 | 3.39e-01 | 98.2% | 20.1% |
| 3612023 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 3.48e-01 | 98.2% | 49.0% |
| 3797802 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 49.0 | 3.52e-01 | 98.2% | 64.7% |
D2
medium
residues 63-124
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.55 | 46.0 | 3.66e-01 | 100.0% | 83.6% |
| 4oiyA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.51 | 30.0 | 2.82e-01 | 88.7% | 43.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3676983 | 109.4.1.957 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_N | 0.52 | 35.0 | 3.11e-01 | 90.3% | 45.0% |
| 3719604 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.69e-01 | 91.9% | 73.8% |
| 3696796 | 4156.1.1.11 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N | 0.50 | 40.0 | 2.79e-01 | 96.8% | 24.3% |
D3
medium
residues 125-226
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05019.19 best | Coq4 | 41.6 | 1.30e-10 | 92.2% | 43.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vwtA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 42.0 | 3.09e-01 | 88.2% | 42.2% |
| 1b68A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.53 | 42.0 | 3.87e-01 | 87.3% | 88.4% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 42.0 | 3.84e-01 | 87.3% | 78.3% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.52 | 38.0 | 4.15e-01 | 95.1% | 96.3% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 41.0 | 2.83e-01 | 88.2% | 68.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4214196 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.92 | 74.0 | 5.70e-01 | 83.3% | 43.4% |
| 3400645 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.92 | 81.0 | 6.00e-01 | 91.2% | 42.7% |
| 4370767 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.92 | 78.0 | 5.84e-01 | 88.2% | 41.8% |
| 4020426 | 3104.1.1.0 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein | 0.91 | 78.0 | 5.95e-01 | 89.2% | 44.3% |
| 3271650 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.91 | 79.0 | 6.25e-01 | 91.2% | 50.5% |
| 4120463 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.90 | 79.0 | 5.93e-01 | 92.2% | 43.1% |
| 119493 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.90 | 76.0 | 5.88e-01 | 89.2% | 46.9% |
| 3495345 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.89 | 73.0 | 6.22e-01 | 85.3% | 58.1% |
| 4352971 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.88 | 83.0 | 6.22e-01 | 100.0% | 47.3% |
| 4192213 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.87 | 79.0 | 5.88e-01 | 95.1% | 43.6% |
| 4383223 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.87 | 82.0 | 6.06e-01 | 100.0% | 44.7% |
| 3605357 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.85 | 74.0 | 5.67e-01 | 92.2% | 48.1% |
| 3595820 | 3104.1.1.0 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein | 0.82 | 69.0 | 5.68e-01 | 89.2% | 57.1% |
| 4948915 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.57 | 45.0 | 3.68e-01 | 87.3% | 96.7% |
| 3966658 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.57 | 47.0 | 3.58e-01 | 87.3% | 62.3% |
| 4062553 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.57 | 30.0 | 3.24e-01 | 87.3% | 57.8% |
| 4885878 | 601.1.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CHASE3 | 0.56 | 46.0 | 4.07e-01 | 88.2% | 66.7% |
| 5038395 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.54 | 43.0 | 3.81e-01 | 87.3% | 68.4% |
| 4959549 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.54 | 43.0 | 3.58e-01 | 87.3% | 52.4% |
| 5042166 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.54 | 43.0 | 3.63e-01 | 88.2% | 61.7% |
| 5020411 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.53 | 43.0 | 3.81e-01 | 88.2% | 66.0% |
| 4486891 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.52 | 44.0 | 3.09e-01 | 92.2% | 63.0% |
| 3945003 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 41.0 | 3.66e-01 | 87.3% | 62.7% |
| 4008098 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.51 | 40.0 | 3.89e-01 | 87.3% | 78.3% |
| 4966426 | 109.3.1.325 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ATP-synt_C | 0.51 | 40.0 | 3.45e-01 | 85.3% | 78.2% |