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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00214

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00214

Identity

Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.79 72.0 5.55e-01 100.0% 84.4%
1ct9A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.76 68.0 5.42e-01 100.0% 88.0%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 49.0 3.97e-01 97.9% 76.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001504 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.72 65.0 5.45e-01 100.0% 85.0%
D2 high residues 115-229_291-383
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q15D02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 62.0 5.64e-01 86.5% 84.7%
1m1zA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.73 62.0 5.55e-01 87.5% 81.2%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 23.0 3.00e-01 95.2% 56.2%
1zunA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 49.0 5.11e-01 87.0% 100.0%
3ilvA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 48.0 4.11e-01 85.6% 70.6%
2r9zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 23.0 2.92e-01 95.2% 57.6%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 23.0 2.88e-01 93.8% 56.6%
2dplA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 44.0 4.94e-01 85.6% 100.0%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 48.0 4.42e-01 88.9% 75.6%
3kv1A00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 3.71e-01 71.2% 87.4%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 47.0 4.45e-01 88.9% 75.7%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 47.0 4.64e-01 88.5% 89.4%
2vxoA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 47.0 4.63e-01 89.4% 98.6%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 47.0 4.35e-01 89.4% 72.7%
3vrhA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 48.0 4.28e-01 100.0% 95.0%
2b4qB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 38.0 3.60e-01 74.0% 88.7%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 39.0 3.98e-01 76.9% 92.6%
1xg5B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 3.57e-01 74.0% 90.2%
3tzqB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 3.55e-01 74.0% 90.0%
4gkbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 3.52e-01 74.0% 87.0%
4z0tA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 37.0 3.50e-01 74.5% 87.3%
5er6C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 37.0 3.55e-01 74.5% 88.2%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 39.0 3.48e-01 81.2% 72.7%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983429 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.76 65.0 5.86e-01 89.4% 88.4%
5046642 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.75 65.0 5.68e-01 89.9% 82.0%
5044108 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.75 64.0 5.80e-01 89.9% 85.8%
5065072 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.75 64.0 5.54e-01 89.9% 78.4%
4968614 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.74 64.0 6.01e-01 89.4% 95.5%
5004100 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.74 64.0 5.85e-01 89.9% 90.6%
5044033 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.74 64.0 5.69e-01 89.9% 85.3%
5018426 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.73 63.0 5.55e-01 89.9% 82.0%
4967200 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.73 63.0 5.60e-01 89.9% 87.9%
4932416 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.73 63.0 5.68e-01 89.9% 88.4%
4928871 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.72 60.0 5.70e-01 87.5% 96.3%
4927582 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.72 61.0 4.82e-01 88.5% 70.8%
4305205 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.71 59.0 5.25e-01 87.5% 75.2%
5062204 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.61 52.0 5.14e-01 88.9% 84.7%
5014269 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.60 52.0 4.46e-01 89.9% 88.9%
5026960 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.60 52.0 4.66e-01 91.3% 100.0%
4513465 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.59 49.0 4.75e-01 86.1% 80.0%
None 0.59 50.0 3.77e-01 88.5% 79.4%
3174284 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 50.0 4.29e-01 88.9% 69.1%
4940246 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.59 47.0 5.13e-01 88.5% 98.9%
3248035 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.59 49.0 4.61e-01 88.0% 84.3%
3558070 327.3.1.0 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.59 50.0 3.79e-01 89.9% 79.1%
4005131 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.59 48.0 4.59e-01 85.6% 77.1%
5082742 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 51.0 4.63e-01 90.9% 79.6%
5041746 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 49.0 4.48e-01 88.9% 77.5%
5000403 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 49.0 4.34e-01 88.9% 74.9%
4644409 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.58 50.0 4.57e-01 88.9% 74.1%
4259530 2005.1.1.23 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.58 49.0 4.63e-01 87.5% 89.8%
4945173 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 47.0 4.94e-01 88.0% 93.5%
5037787 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 43.0 4.49e-01 87.5% 80.8%
4927969 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 49.0 4.52e-01 88.9% 84.2%
4100489 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 48.0 4.69e-01 86.1% 81.8%
4943110 2005.1.1.111 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › GMP_synt_C 0.58 49.0 5.06e-01 89.9% 100.0%
5051458 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 50.0 4.92e-01 90.4% 98.2%
4104275 2005.1.1.47 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.58 47.0 4.55e-01 85.1% 94.0%
4957756 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.58 49.0 4.22e-01 89.4% 73.7%
5035964 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 48.0 4.32e-01 88.5% 72.8%
4386055 2005.1.1.47 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.58 49.0 4.54e-01 88.0% 74.9%
5028084 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 48.0 4.29e-01 88.5% 71.2%
4648784 2005.1.1.47 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.58 49.0 4.47e-01 89.4% 71.5%
None 0.58 45.0 4.42e-01 80.3% 90.0%
3273951 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 48.0 4.44e-01 88.0% 77.4%
3604378 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.57 48.0 4.46e-01 88.5% 78.5%
3789499 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 48.0 4.43e-01 87.0% 79.6%
4992140 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 48.0 4.39e-01 88.0% 80.0%
None 0.57 48.0 4.46e-01 88.0% 73.1%
5026536 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 48.0 4.43e-01 88.9% 81.1%
5078148 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 48.0 4.21e-01 88.0% 68.6%
4952835 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 45.0 4.94e-01 87.5% 100.0%
5066233 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 48.0 4.35e-01 88.5% 72.1%
4045263 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 48.0 4.51e-01 88.5% 77.6%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 49.0 4.27e-01 89.9% 77.0%
4346140 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 47.0 4.47e-01 86.1% 81.7%
4484951 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 48.0 4.39e-01 88.5% 75.1%
4483631 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 48.0 4.29e-01 88.0% 79.3%
4943565 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 47.0 4.36e-01 88.0% 80.4%
4072992 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 48.0 4.38e-01 89.9% 70.9%
5069002 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 47.0 4.32e-01 88.0% 73.0%
4675904 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 48.0 4.59e-01 88.5% 79.1%
5077882 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 47.0 4.65e-01 88.5% 92.9%
3964181 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.56 47.0 4.36e-01 88.0% 75.3%
4598409 2005.1.1.27 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.56 44.0 4.03e-01 79.8% 82.3%
None 0.56 47.0 4.48e-01 88.0% 80.4%
None 0.56 45.0 4.27e-01 84.1% 88.4%
133894 2005.1.1.47 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.56 48.0 4.59e-01 89.9% 79.4%
4324444 2005.1.1.23 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.56 48.0 4.61e-01 89.9% 95.7%
5054895 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.56 47.0 4.51e-01 87.5% 83.4%
4450533 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.56 47.0 4.15e-01 88.0% 68.6%
4337374 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.56 46.0 4.41e-01 86.1% 80.4%
4582525 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.55 46.0 4.44e-01 87.0% 80.9%
None 0.55 45.0 4.40e-01 85.1% 80.0%
3356026 2005.1.1.23 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.55 46.0 4.26e-01 86.1% 83.5%
None 0.55 47.0 4.36e-01 88.9% 72.9%
None 0.55 43.0 4.19e-01 79.3% 87.5%
4680017 2005.1.1.27 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.55 43.0 4.11e-01 80.8% 85.8%
4075676 2005.1.1.27 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.55 44.0 4.14e-01 84.1% 85.0%
None 0.54 43.0 4.19e-01 83.2% 91.7%
3797737 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 42.0 3.55e-01 81.2% 80.6%
None 0.54 40.0 3.46e-01 77.4% 100.0%
5022267 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 44.0 4.10e-01 87.0% 91.2%
3690227 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.52 40.0 3.41e-01 79.8% 76.2%
3696234 2003.1.1.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.52 40.0 3.92e-01 78.8% 93.6%
4015469 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.52 40.0 3.44e-01 80.3% 74.7%
5048640 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 37.0 3.32e-01 72.6% 82.3%
3784461 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 39.0 3.41e-01 80.3% 82.7%
3723246 2003.1.1.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 37.0 3.23e-01 73.6% 88.6%