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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00247
Bact-VirALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00247
Identity
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-100
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 47.0 | 5.41e-01 | 86.5% | 98.3% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 47.0 | 5.15e-01 | 98.9% | 86.3% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 5.18e-01 | 85.4% | 95.5% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 46.0 | 5.17e-01 | 84.3% | 100.0% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 43.0 | 4.91e-01 | 86.5% | 98.4% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 5.03e-01 | 98.9% | 88.7% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 43.0 | 4.74e-01 | 85.4% | 92.6% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 39.0 | 4.55e-01 | 87.6% | 94.9% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 36.0 | 4.28e-01 | 70.8% | 91.1% |
| 3meuB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.80e-01 | 87.6% | 94.6% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 39.0 | 4.47e-01 | 84.3% | 95.2% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 38.0 | 4.01e-01 | 98.9% | 75.0% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 47.0 | 4.03e-01 | 89.9% | 95.0% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 4.20e-01 | 93.3% | 82.4% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.55 | 46.0 | 3.99e-01 | 93.3% | 94.9% |
| 4gs5A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 40.0 | 2.97e-01 | 78.7% | 75.0% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 43.0 | 4.06e-01 | 89.9% | 69.3% |
| 1tocR02 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.54 | 28.0 | 3.37e-01 | 97.8% | 75.9% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.77e-01 | 94.4% | 88.9% |
| 2znrA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 41.0 | 3.31e-01 | 83.1% | 74.2% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 38.0 | 3.48e-01 | 75.3% | 82.1% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 42.0 | 3.34e-01 | 86.5% | 49.2% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.53 | 44.0 | 3.12e-01 | 91.0% | 86.6% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 33.0 | 3.45e-01 | 94.4% | 68.2% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 41.0 | 3.00e-01 | 91.0% | 74.1% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 30.0 | 3.11e-01 | 70.8% | 60.2% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 29.0 | 3.50e-01 | 100.0% | 87.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816553 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.70 | 43.0 | 5.15e-01 | 75.3% | 100.0% |
| 3535278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 41.0 | 4.78e-01 | 88.8% | 95.0% |
| 3620905 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 43.0 | 4.33e-01 | 97.8% | 68.9% |
| 4317035 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 44.0 | 4.49e-01 | 98.9% | 76.5% |
| 3547093 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 43.0 | 4.30e-01 | 98.9% | 71.1% |
| 3604644 | 2004.1.1.712 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87, HerA_C, TrwB_AAD_bind | 0.61 | 43.0 | 2.78e-01 | 73.0% | 16.1% |
| 3547102 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 42.0 | 4.34e-01 | 98.9% | 75.3% |
| 3989430 | 3755.3.1.127 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N | 0.61 | 30.0 | 2.63e-01 | 80.9% | 30.0% |
| 3570368 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 45.0 | 4.33e-01 | 98.9% | 69.0% |
| 3353828 | 4.1.1.321 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26734 | 0.61 | 48.0 | 4.44e-01 | 89.9% | 67.3% |
| 259963 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.55 | 46.0 | 3.99e-01 | 93.3% | 94.9% |
| 3184022 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 47.0 | 4.19e-01 | 97.8% | 96.2% |
| 3969115 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.54 | 32.0 | 3.11e-01 | 70.8% | 48.6% |
| 4409502 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.54 | 43.0 | 4.08e-01 | 96.6% | 71.8% |
| 5037849 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.53 | 47.0 | 4.24e-01 | 98.9% | 79.2% |
| 3760738 | 4357.1.1.9 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 | 0.52 | 41.0 | 3.55e-01 | 87.6% | 96.6% |
| 4470299 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 43.0 | 3.43e-01 | 93.3% | 75.3% |
| 4343880 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.51 | 34.0 | 3.55e-01 | 89.9% | 72.9% |
| 3739576 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.51 | 30.0 | 3.55e-01 | 80.9% | 94.5% |
| 3211114 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 43.0 | 3.72e-01 | 97.8% | 97.3% |
| 4636769 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.50 | 33.0 | 2.94e-01 | 95.5% | 44.4% |
D2
high
residues 297-406_433-488
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bi3A02 | 4.10.280.80 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › | 0.56 | 21.0 | 2.96e-01 | 86.1% | 70.8% |
| 2rjiA00 | 1.10.1740.170 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI | 0.54 | 25.0 | 3.33e-01 | 88.6% | 81.0% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 27.0 | 3.33e-01 | 84.9% | 75.7% |
| 1ux8A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 29.0 | 3.39e-01 | 89.8% | 76.3% |
| 1dlwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 29.0 | 3.40e-01 | 87.3% | 77.6% |
| 3aq5A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 28.0 | 3.28e-01 | 88.0% | 74.4% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.50 | 27.0 | 3.58e-01 | 88.0% | 98.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3499869 | 633.24.1.4 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 | 0.56 | 29.0 | 3.57e-01 | 74.1% | 78.1% |
| 3769107 | 592.6.1.4 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF28135 | 0.55 | 26.0 | 3.68e-01 | 74.7% | 93.7% |
| 4631090 | 101.1.1.276 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-bind_6 | 0.51 | 28.0 | 2.63e-01 | 75.9% | 41.4% |
D3
medium
residues 122-296_407-432
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 14.0 | 2.62e-01 | 92.0% | 71.9% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.54 | 22.0 | 3.00e-01 | 90.5% | 72.8% |
| 7dg2C01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.52 | 22.0 | 3.33e-01 | 95.5% | 98.7% |