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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00250
Bact-VirALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00250
Identity
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-62
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y1rK00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 52.0 | 4.41e-01 | 79.3% | 69.6% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 49.0 | 4.41e-01 | 81.0% | 84.1% |
| 3tx8A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 48.0 | 3.87e-01 | 79.3% | 94.7% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 53.0 | 4.30e-01 | 93.1% | 85.6% |
| 3dmlA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 46.0 | 3.93e-01 | 81.0% | 45.3% |
| 1v8hA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 47.0 | 3.82e-01 | 81.0% | 41.5% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 47.0 | 3.47e-01 | 81.0% | 28.7% |
| 3cvzB01 | 3.30.1490.290 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 | 0.64 | 47.0 | 4.05e-01 | 81.0% | 54.5% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 49.0 | 4.25e-01 | 86.2% | 83.0% |
| 4ykiA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 51.0 | 3.88e-01 | 94.8% | 37.4% |
| 3skvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 43.0 | 3.12e-01 | 82.8% | 27.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 45.0 | 3.94e-01 | 81.0% | 51.1% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.62 | 45.0 | 3.85e-01 | 81.0% | 89.3% |
| 2w1nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 3.61e-01 | 81.0% | 48.8% |
| 5ujeA01 | 3.30.1760.10 | Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | 0.61 | 51.0 | 4.25e-01 | 100.0% | 63.1% |
| 3fk4B01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.60 | 44.0 | 3.63e-01 | 81.0% | 89.6% |
| 6grqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 44.0 | 3.83e-01 | 81.0% | 51.1% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.60 | 45.0 | 3.94e-01 | 81.0% | 81.8% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.60 | 44.0 | 3.88e-01 | 81.0% | 98.9% |
| 4gb7A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 47.0 | 2.91e-01 | 91.4% | 79.6% |
| 4eskC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 42.0 | 3.55e-01 | 81.0% | 44.9% |
| 7pjjA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 45.0 | 3.44e-01 | 81.0% | 60.5% |
| 3pdgA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 3.31e-01 | 81.0% | 42.9% |
| 2kl6A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 3.48e-01 | 81.0% | 41.7% |
| 3cmgA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 3.47e-01 | 79.3% | 47.1% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 3.69e-01 | 75.9% | 96.6% |
| 1yq2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 3.52e-01 | 81.0% | 45.2% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 45.0 | 3.59e-01 | 89.7% | 64.9% |
| 2x49A01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.58 | 41.0 | 3.69e-01 | 82.8% | 87.5% |
| 4uw2B03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 49.0 | 3.79e-01 | 100.0% | 75.0% |
| 2dmwA01 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.56 | 45.0 | 3.75e-01 | 94.8% | 80.2% |
| 6etzA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 48.0 | 3.34e-01 | 98.3% | 86.3% |
| 1g8mA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.56 | 44.0 | 3.20e-01 | 89.7% | 53.4% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 40.0 | 3.53e-01 | 81.0% | 94.8% |
| 2gy5A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 3.44e-01 | 81.0% | 48.9% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.55 | 44.0 | 4.18e-01 | 98.3% | 74.6% |
| 1ne6A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 43.0 | 3.32e-01 | 84.5% | 46.7% |
| 1vcaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.29e-01 | 81.0% | 46.4% |
| 5jipA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.34e-01 | 81.0% | 48.9% |
| 1i8nA00 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.53 | 43.0 | 3.87e-01 | 100.0% | 67.4% |
| 6f95A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 45.0 | 3.43e-01 | 100.0% | 71.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 38.0 | 3.56e-01 | 100.0% | 63.2% |
| 2wz8A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 3.06e-01 | 86.2% | 60.0% |
| 1k92A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.51 | 41.0 | 2.80e-01 | 89.7% | 63.3% |
| 4madA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 40.0 | 3.19e-01 | 91.4% | 92.5% |
| 2pkaA00 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 40.0 | 3.64e-01 | 94.8% | 62.5% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.50 | 42.0 | 3.89e-01 | 98.3% | 75.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4311304 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.72 | 55.0 | 3.91e-01 | 84.5% | 71.7% |
| 3959590 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.71 | 39.0 | 4.53e-01 | 79.3% | 77.5% |
| 3953385 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.69 | 39.0 | 4.48e-01 | 79.3% | 80.0% |
| 3743609 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.69 | 55.0 | 3.96e-01 | 91.4% | 62.0% |
| 4032691 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.68 | 50.0 | 4.18e-01 | 77.6% | 71.6% |
| 4667955 | 304.150.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain | 0.68 | 52.0 | 4.39e-01 | 82.8% | 74.7% |
| 3394266 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.67 | 50.0 | 3.99e-01 | 81.0% | 94.2% |
| 5072924 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.67 | 49.0 | 3.77e-01 | 79.3% | 93.3% |
| 3996298 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.66 | 49.0 | 4.45e-01 | 81.0% | 92.5% |
| 4947339 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.66 | 56.0 | 4.81e-01 | 100.0% | 79.0% |
| 3948167 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.64 | 49.0 | 4.09e-01 | 93.1% | 45.5% |
| 3718648 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 49.0 | 4.08e-01 | 86.2% | 91.7% |
| 3993856 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.63 | 50.0 | 3.90e-01 | 91.4% | 70.7% |
| 5053613 | 5103.1.1.2 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › DUF1015 | 0.63 | 54.0 | 4.36e-01 | 100.0% | 78.3% |
| 4665681 | 304.48.1.39 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N | 0.63 | 52.0 | 3.32e-01 | 93.1% | 61.7% |
| 3891055 | 304.163.1.2 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 | 0.63 | 47.0 | 4.05e-01 | 82.8% | 81.1% |
| 5081264 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 44.0 | 3.93e-01 | 81.0% | 53.8% |
| 3490881 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.62 | 50.0 | 4.04e-01 | 93.1% | 83.9% |
| 5064037 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.62 | 52.0 | 4.31e-01 | 100.0% | 77.4% |
| 5082970 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.61 | 51.0 | 4.25e-01 | 100.0% | 78.3% |
| 5050380 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 42.0 | 3.66e-01 | 81.0% | 46.7% |
| 5050310 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 42.0 | 3.53e-01 | 81.0% | 44.2% |
| 4952053 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.60 | 50.0 | 4.02e-01 | 100.0% | 81.5% |
| 4026632 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.60 | 47.0 | 3.70e-01 | 93.1% | 75.0% |
| 4529669 | 223.2.1.32 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 | 0.59 | 49.0 | 3.77e-01 | 94.8% | 72.9% |
| 3385583 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.59 | 47.0 | 3.27e-01 | 93.1% | 56.8% |
| 5018277 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.59 | 48.0 | 4.21e-01 | 100.0% | 82.0% |
| 5072024 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.58 | 49.0 | 3.29e-01 | 98.3% | 72.5% |
| 4022662 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 41.0 | 3.76e-01 | 79.3% | 89.4% |
| 3176453 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.57 | 46.0 | 3.54e-01 | 91.4% | 65.0% |
| 3391335 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.57 | 40.0 | 3.61e-01 | 77.6% | 91.1% |
| 4469838 | 10.32.1.215 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 | 0.56 | 43.0 | 3.07e-01 | 82.8% | 38.2% |
| 169110 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 44.0 | 4.20e-01 | 98.3% | 75.7% |
| 3686788 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.55 | 45.0 | 2.98e-01 | 100.0% | 72.5% |
| 4944626 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 47.0 | 3.36e-01 | 100.0% | 33.0% |
| 3914291 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 41.0 | 3.36e-01 | 81.0% | 59.0% |
| 3848227 | 223.2.1.15 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin | 0.54 | 43.0 | 3.36e-01 | 94.8% | 64.0% |
| 3973432 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 40.0 | 3.37e-01 | 82.8% | 92.4% |
| 4021441 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.45e-01 | 93.1% | 70.0% |
| 3901659 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.53 | 39.0 | 3.12e-01 | 79.3% | 56.5% |
| 3911204 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.52 | 43.0 | 4.06e-01 | 98.3% | 80.0% |
| 3879002 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.52 | 39.0 | 3.14e-01 | 81.0% | 54.8% |
| 3918379 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.50 | 37.0 | 3.28e-01 | 81.0% | 73.3% |