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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00284

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00284

Identity

Kingdom:
phage

Quality

85.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-53
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 58.0 5.14e-01 100.0% 73.7%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 46.0 3.66e-01 100.0% 34.2%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 52.0 4.89e-01 100.0% 79.1%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 55.0 4.76e-01 100.0% 70.9%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 51.0 3.96e-01 100.0% 52.0%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.60 50.0 3.58e-01 100.0% 44.2%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.02e-01 100.0% 20.4%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.60 45.0 3.38e-01 100.0% 30.1%
1j0gA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 50.0 4.20e-01 100.0% 76.1%
1zoyB01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.59 50.0 4.04e-01 100.0% 82.1%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.59 48.0 4.00e-01 100.0% 100.0%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.59 41.0 3.48e-01 76.0% 60.2%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.58 46.0 3.03e-01 100.0% 37.1%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 45.0 3.92e-01 90.0% 53.5%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.57 48.0 3.46e-01 100.0% 53.7%
2ej4A01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 45.0 3.98e-01 96.0% 88.2%
4zpxA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.14e-01 100.0% 37.8%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.31e-01 100.0% 37.3%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 37.0 2.38e-01 70.0% 62.7%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.56 45.0 3.29e-01 100.0% 39.0%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.56 46.0 3.33e-01 100.0% 62.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 43.0 3.74e-01 100.0% 54.3%
2w82A01 3.10.20.480 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Antirestriction protein ArdA, domain 1 0.53 42.0 4.09e-01 100.0% 81.4%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.28e-01 100.0% 59.2%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.40e-01 100.0% 41.0%
1we6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 3.53e-01 100.0% 62.2%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.53 44.0 3.51e-01 98.0% 45.0%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 42.0 3.43e-01 100.0% 48.7%
3tqhA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.52 42.0 3.00e-01 98.0% 58.2%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.52 40.0 3.72e-01 98.0% 71.4%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 42.0 2.66e-01 100.0% 87.6%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 3.32e-01 98.0% 65.5%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.17e-01 82.0% 54.8%
3up6A02 2.60.40.3380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.08e-01 100.0% 42.9%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 39.0 3.71e-01 96.0% 100.0%
2j8zA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.50 41.0 2.89e-01 100.0% 100.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.77 61.0 6.35e-01 100.0% 97.8%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.74 58.0 6.04e-01 96.0% 97.8%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.74 60.0 6.04e-01 100.0% 92.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 64.0 6.12e-01 100.0% 98.3%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.72 63.0 4.96e-01 100.0% 54.8%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 62.0 4.91e-01 100.0% 54.3%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 61.0 4.85e-01 100.0% 52.8%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 62.0 4.86e-01 100.0% 52.8%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 61.0 5.81e-01 100.0% 95.0%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 61.0 5.87e-01 100.0% 98.3%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.70 59.0 5.50e-01 100.0% 90.8%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 60.0 5.14e-01 100.0% 69.9%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 58.0 5.74e-01 100.0% 100.0%
5013194 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.70 58.0 5.71e-01 96.0% 100.0%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 59.0 5.52e-01 100.0% 89.1%
4030871 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.68 58.0 5.28e-01 100.0% 71.4%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 58.0 5.18e-01 100.0% 76.0%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 57.0 4.66e-01 100.0% 56.4%
3621628 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.68 57.0 3.75e-01 98.0% 22.9%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 56.0 5.00e-01 100.0% 73.3%
3943126 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.67 58.0 5.35e-01 100.0% 80.0%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.67 56.0 4.71e-01 100.0% 56.7%
3702557 3945.1.1.0 alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain 0.64 51.0 3.86e-01 100.0% 35.4%
4421202 327.6.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.63 50.0 3.74e-01 96.0% 72.9%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.63 53.0 5.02e-01 100.0% 81.7%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 53.0 3.88e-01 100.0% 36.6%
5049182 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.62 49.0 3.27e-01 100.0% 19.6%
5011747 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 47.0 3.97e-01 100.0% 47.8%
5000831 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.62 51.0 3.31e-01 100.0% 47.3%
3786220 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.61 52.0 4.44e-01 100.0% 76.5%
3801890 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 49.0 3.39e-01 100.0% 28.0%
3742881 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.60 51.0 3.85e-01 100.0% 39.2%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.60 48.0 4.40e-01 100.0% 66.7%
3896560 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 51.0 3.58e-01 100.0% 37.1%
1145963 4012.3.1.1 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.59 47.0 4.01e-01 100.0% 58.0%
4002986 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.59 49.0 3.81e-01 100.0% 87.2%
4951717 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 47.0 4.34e-01 100.0% 97.3%
4003316 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.58 49.0 3.77e-01 100.0% 48.8%
3276865 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 45.0 3.82e-01 100.0% 48.0%
4024013 4954.1.1.1 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.58 41.0 2.75e-01 78.0% 47.7%
3650990 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.57 47.0 3.60e-01 100.0% 38.5%
1556 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 46.0 3.75e-01 100.0% 45.9%
3658421 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 46.0 4.18e-01 98.0% 98.7%
4022610 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 46.0 2.85e-01 100.0% 49.6%
5008102 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.56 46.0 3.84e-01 100.0% 99.0%
3205532 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.56 47.0 3.08e-01 100.0% 40.8%
4943252 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 46.0 3.51e-01 100.0% 36.6%
3218957 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.56 45.0 3.66e-01 100.0% 58.3%
5049254 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 40.0 2.90e-01 78.0% 75.2%
3388650 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.55 45.0 4.18e-01 100.0% 72.9%
3197773 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.55 46.0 2.89e-01 100.0% 16.8%
3938498 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.55 42.0 3.61e-01 94.0% 48.0%
3192640 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.53 40.0 3.23e-01 82.0% 40.0%
3403464 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.53 41.0 3.93e-01 100.0% 76.7%
3484494 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.51e-01 100.0% 49.1%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.53 44.0 3.61e-01 100.0% 48.1%
3961932 323.1.1.9 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C 0.52 38.0 2.58e-01 82.0% 27.4%
3743726 327.5.1.7 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 0.52 41.0 3.07e-01 92.0% 70.3%
5052130 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.52 41.0 2.54e-01 100.0% 29.0%
3592488 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 39.0 2.49e-01 92.0% 17.9%
3788099 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 43.0 2.63e-01 100.0% 88.3%
2529893 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 40.0 3.77e-01 98.0% 100.0%