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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00333

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00333

Identity

Kingdom:
phage

Quality

69.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-111
PDB
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 62.0 6.22e-01 82.8% 72.7%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 71.0 5.82e-01 100.0% 51.4%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 69.0 7.12e-01 100.0% 93.4%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 67.0 5.66e-01 98.4% 53.8%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 65.0 7.00e-01 93.8% 100.0%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 66.0 5.59e-01 98.4% 56.4%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 63.0 5.33e-01 93.8% 52.3%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 66.0 5.46e-01 100.0% 52.7%
1bl0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 62.0 6.53e-01 95.3% 100.0%
5tgtA02 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 69.0 5.54e-01 100.0% 56.9%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 61.0 6.45e-01 96.9% 100.0%
2cqqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 53.0 5.26e-01 84.4% 68.7%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 53.0 4.28e-01 82.8% 39.2%
2cfoA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 67.0 5.70e-01 100.0% 67.3%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 66.0 5.85e-01 100.0% 75.3%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.38e-01 100.0% 76.2%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 61.0 5.36e-01 100.0% 70.4%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.06e-01 100.0% 65.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 53.0 4.20e-01 84.4% 42.1%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 47.0 5.28e-01 84.4% 97.9%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.69 53.0 4.94e-01 82.8% 79.7%
2z0fA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.67 44.0 3.61e-01 95.3% 35.2%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 48.0 4.69e-01 92.2% 69.0%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.66 50.0 4.70e-01 95.3% 65.9%
1sxjC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.64 53.0 4.79e-01 96.9% 98.9%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.63 55.0 4.78e-01 100.0% 97.0%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 53.0 3.75e-01 95.3% 39.4%
4ch7A01 1.10.10.2890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 46.0 3.93e-01 98.4% 46.6%
5d1rB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 52.0 3.58e-01 95.3% 35.4%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.62 53.0 4.19e-01 100.0% 48.2%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 37.0 3.45e-01 78.1% 46.3%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.61 42.0 3.57e-01 73.4% 89.7%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 41.0 3.84e-01 71.9% 84.5%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 40.0 3.88e-01 79.7% 60.3%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 51.0 4.15e-01 98.4% 52.0%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.60 51.0 4.49e-01 98.4% 88.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.59 41.0 3.81e-01 73.4% 83.7%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.58 48.0 3.44e-01 100.0% 30.0%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.58 48.0 3.53e-01 95.3% 89.5%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 46.0 4.58e-01 84.4% 100.0%
3csvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 48.0 3.36e-01 100.0% 48.8%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.57 45.0 4.73e-01 95.3% 100.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.57 45.0 4.69e-01 93.8% 98.3%
4q5rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 49.0 4.14e-01 100.0% 73.2%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 43.0 4.30e-01 96.9% 80.9%
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 42.0 3.86e-01 100.0% 59.3%
2bnxB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 46.0 3.26e-01 98.4% 46.3%
3urzA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 40.0 2.94e-01 95.3% 24.8%
3ghyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 47.0 3.93e-01 100.0% 56.0%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 47.0 4.57e-01 100.0% 86.5%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 48.0 4.84e-01 100.0% 97.0%
1cgnA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.56 47.0 3.91e-01 100.0% 79.8%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.55 46.0 4.11e-01 98.4% 63.6%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.55 47.0 2.94e-01 100.0% 86.1%
3fmsA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.55 46.0 3.71e-01 100.0% 80.9%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 3.87e-01 95.3% 73.4%
1nktA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.85e-01 90.6% 91.1%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.53 45.0 3.98e-01 100.0% 88.2%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.53 45.0 3.68e-01 100.0% 78.3%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 45.0 4.02e-01 100.0% 86.5%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.52 42.0 4.02e-01 92.2% 83.5%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.52 36.0 3.62e-01 95.3% 71.6%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.51 38.0 3.59e-01 82.8% 72.8%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588540 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.85 68.0 7.27e-01 92.2% 98.2%
3975658 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.85 69.0 6.09e-01 98.4% 62.2%
3281262 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.85 68.0 7.26e-01 93.8% 100.0%
4094272 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.84 68.0 7.22e-01 95.3% 100.0%
3590374 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.84 67.0 7.20e-01 93.8% 100.0%
3987774 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 67.0 7.19e-01 93.8% 100.0%
3967873 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.84 67.0 7.20e-01 93.8% 100.0%
3984271 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 69.0 5.77e-01 96.9% 54.3%
3517520 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.83 69.0 7.07e-01 96.9% 95.0%
4233016 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.83 67.0 7.14e-01 92.2% 100.0%
4193366 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.83 67.0 5.58e-01 100.0% 50.9%
4953237 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 67.0 7.14e-01 93.8% 100.0%
3945103 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 66.0 7.06e-01 95.3% 100.0%
4034594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 66.0 7.09e-01 93.8% 100.0%
3976759 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.83 66.0 5.65e-01 93.8% 55.0%
3280571 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.83 71.0 7.34e-01 100.0% 100.0%
4004617 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.83 68.0 5.52e-01 100.0% 49.6%
4540842 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.82 69.0 5.03e-01 100.0% 34.7%
3968254 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.82 67.0 5.81e-01 95.3% 58.9%
3283917 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.82 61.0 6.80e-01 85.9% 100.0%
3970536 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.82 66.0 7.03e-01 93.8% 100.0%
4277585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 64.0 6.85e-01 100.0% 98.2%
3945505 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.82 67.0 5.41e-01 96.9% 47.9%
4379469 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 64.0 6.66e-01 92.2% 90.0%
4348165 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.81 63.0 6.31e-01 90.6% 81.5%
3278092 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 66.0 6.63e-01 95.3% 87.7%
3728726 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.81 72.0 6.81e-01 100.0% 82.7%
3969207 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.81 67.0 6.36e-01 100.0% 77.3%
4395930 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.81 72.0 4.78e-01 100.0% 28.4%
3949227 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.81 64.0 6.42e-01 93.8% 84.6%
4088927 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.81 72.0 5.31e-01 100.0% 42.4%
4185536 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.80 72.0 4.20e-01 100.0% 13.8%
3727621 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 70.0 6.46e-01 100.0% 76.2%
3969486 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 6.75e-01 93.8% 100.0%
3945925 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.80 63.0 5.45e-01 93.8% 55.0%
3968298 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.80 63.0 6.76e-01 93.8% 100.0%
3277668 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.80 63.0 6.74e-01 93.8% 100.0%
4142269 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.80 63.0 6.68e-01 93.8% 100.0%
3982082 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 62.0 6.62e-01 95.3% 98.2%
3960513 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 64.0 6.79e-01 96.9% 100.0%
3282956 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 63.0 6.76e-01 98.4% 100.0%
4513080 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.78 70.0 4.95e-01 100.0% 36.3%
3288983 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 6.89e-01 100.0% 98.3%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 6.26e-01 82.8% 91.7%
5042596 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.78 69.0 4.57e-01 100.0% 26.6%
3941568 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 6.51e-01 95.3% 100.0%
5025032 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.77 54.0 5.99e-01 76.6% 94.0%
3788384 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 5.61e-01 98.4% 60.6%
3963650 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 55.0 6.10e-01 95.3% 98.0%
4112733 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.75 66.0 4.96e-01 100.0% 44.4%
2488194 101.8.1.1 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.75 66.0 4.46e-01 100.0% 29.3%
3203415 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.75 66.0 6.03e-01 98.4% 82.4%
3241028 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.75 57.0 5.22e-01 82.8% 67.1%
4235025 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.75 66.0 4.65e-01 100.0% 34.5%
5014374 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.74 64.0 3.80e-01 100.0% 13.5%
4203984 101.8.1.1 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.74 64.0 3.80e-01 100.0% 13.5%
5080195 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.74 63.0 3.79e-01 95.3% 14.6%
4182308 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.74 64.0 4.46e-01 100.0% 31.4%
4275897 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.74 65.0 4.82e-01 100.0% 43.6%
5036595 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 55.0 5.90e-01 79.7% 98.2%
4082662 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.73 64.0 4.76e-01 100.0% 42.9%
4446314 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.73 65.0 3.82e-01 100.0% 14.2%
4608205 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.73 65.0 4.81e-01 100.0% 43.6%
5018159 101.29.1.1 alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like › DUF790 0.73 54.0 6.00e-01 78.1% 100.0%
None 0.73 64.0 3.82e-01 100.0% 14.8%
4944587 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.72 59.0 5.05e-01 98.4% 55.2%
3449464 4198.1.1.2 alpha arrays › TerB-like › TerB-like › TerB-like › ThylakoidFormat 0.70 52.0 3.69e-01 81.2% 26.3%
4280641 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.69 59.0 4.49e-01 100.0% 43.6%
3182184 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.69 58.0 5.27e-01 96.9% 80.0%
3402084 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 60.0 5.43e-01 98.4% 100.0%
3878148 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.66 50.0 3.56e-01 95.3% 26.5%
4201679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 4.91e-01 98.4% 68.2%
3998879 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 57.0 4.57e-01 96.9% 54.2%
4046675 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.63 50.0 4.64e-01 98.4% 67.1%
3345965 4982.1.1.3 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › Tic110 0.63 55.0 3.93e-01 100.0% 57.0%
3902172 109.4.1.603 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF1_subA 0.63 51.0 3.16e-01 95.3% 14.2%
3248107 176.1.1.0 alpha arrays › Annexin › Annexin › Annexin 0.63 51.0 5.01e-01 95.3% 82.9%
4261007 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.62 45.0 4.56e-01 96.9% 78.5%
5078904 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.59 49.0 3.54e-01 100.0% 75.3%
3604599 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.58 46.0 4.06e-01 96.9% 58.0%
3797789 5001.1.1.63 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab 0.54 40.0 2.66e-01 81.2% 78.2%
3634960 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.53 44.0 3.86e-01 100.0% 90.9%
D2 high residues 119-228
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jiuA00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.76 58.0 5.99e-01 90.9% 83.8%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.73 58.0 5.94e-01 94.5% 87.5%
3dwcA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.68 63.0 4.01e-01 100.0% 23.0%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 32.0 4.21e-01 94.5% 83.6%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.65 43.0 3.86e-01 98.2% 48.4%
1ka2A00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.64 57.0 3.68e-01 100.0% 21.7%
1h72C01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.64 47.0 4.16e-01 99.1% 52.8%
1r55A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.63 54.0 4.41e-01 93.6% 73.9%
3k7lA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.62 52.0 4.29e-01 90.0% 68.0%
2wb0X01 1.10.269.10 Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain 0.62 42.0 4.16e-01 100.0% 65.0%
2gs8A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 42.0 3.63e-01 90.9% 44.9%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 42.0 3.15e-01 72.7% 38.0%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 27.0 3.01e-01 88.2% 52.2%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.59 28.0 3.82e-01 97.3% 94.1%
3mxtA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.58 33.0 3.42e-01 90.9% 58.0%
2a2cA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 47.0 3.77e-01 99.1% 44.3%
4u04A02 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.58 50.0 4.01e-01 97.3% 93.0%
6z6fA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.56 44.0 3.09e-01 84.5% 85.9%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 43.0 4.09e-01 100.0% 67.2%
1m8pA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 37.0 3.15e-01 71.8% 89.7%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.52 30.0 3.47e-01 91.8% 81.3%
3uqcD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 3.68e-01 85.5% 83.7%
1o6cB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 42.0 3.42e-01 90.0% 93.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937224 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 68.0 5.63e-01 95.5% 58.5%
3289507 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 68.0 6.18e-01 94.5% 87.9%
3954991 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.75 70.0 5.59e-01 100.0% 64.5%
4232269 2498.1.1.75 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MPTase-PolyVal 0.73 61.0 5.61e-01 96.4% 69.3%
4966006 2498.1.1.163 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF5781 0.73 66.0 5.06e-01 97.3% 53.3%
5074974 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.73 67.0 5.11e-01 97.3% 68.1%
5072135 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.73 67.0 5.39e-01 97.3% 77.4%
3226834 2498.1.1.3 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M2 0.72 66.0 4.03e-01 100.0% 17.9%
5061806 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.72 63.0 6.24e-01 93.6% 91.3%
4928554 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.71 64.0 4.18e-01 100.0% 24.0%
3505844 2498.1.1.3 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M2 0.70 63.0 3.61e-01 100.0% 10.2%
4216497 2498.1.1.34 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › ATLF 0.68 60.0 4.71e-01 97.3% 80.0%
4959688 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 61.0 3.97e-01 100.0% 24.1%
4481405 604.39.1.30 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › SpoIIE_N 0.68 47.0 4.41e-01 71.8% 77.0%
5024540 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 61.0 5.55e-01 99.1% 95.2%
3962296 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 59.0 4.56e-01 96.4% 53.0%
3954373 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 59.0 4.25e-01 98.2% 41.4%
4977874 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.63 46.0 3.97e-01 97.3% 48.0%
4944690 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.63 47.0 4.07e-01 97.3% 50.6%
4071459 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.63 33.0 3.48e-01 95.5% 55.0%
5052917 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.63 46.0 3.93e-01 98.2% 47.2%
3867909 2498.1.1.4 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin 0.62 53.0 4.15e-01 92.7% 62.2%
4215373 2498.1.1.35 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 0.58 49.0 4.39e-01 92.7% 86.5%
3249030 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.56 29.0 2.57e-01 96.4% 33.5%
3710918 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.55 40.0 3.42e-01 90.9% 44.7%
4278662 2498.4.1.0 mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) 0.55 44.0 4.43e-01 94.5% 84.2%
1770995 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.53 37.0 3.12e-01 78.2% 39.6%
3172236 604.5.1.31 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.52 38.0 2.94e-01 77.3% 88.6%
3595971 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 36.0 3.20e-01 76.4% 82.4%