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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00340

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00340

Identity

Kingdom:
phage

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-141
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10614.15 best CsgF 49.2 8.40e-13 100.0% 52.3%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.72 58.0 5.56e-01 88.4% 81.2%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.72 51.0 3.84e-01 73.9% 85.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 52.0 3.52e-01 78.3% 64.8%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 47.0 4.15e-01 75.4% 58.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.66 58.0 4.90e-01 100.0% 88.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.65 53.0 4.16e-01 89.9% 82.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.64 56.0 4.73e-01 100.0% 87.5%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 49.0 4.04e-01 88.4% 61.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 53.0 4.31e-01 94.2% 80.3%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.61 44.0 3.53e-01 76.8% 65.9%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 3.09e-01 84.1% 31.6%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 50.0 4.25e-01 91.3% 67.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 54.0 4.32e-01 100.0% 60.4%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 53.0 3.54e-01 100.0% 95.4%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 2.97e-01 85.5% 90.5%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 50.0 4.22e-01 94.2% 68.9%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 45.0 3.71e-01 84.1% 79.5%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 46.0 3.99e-01 85.5% 84.3%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.59 44.0 3.18e-01 79.7% 77.1%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 44.0 4.17e-01 81.2% 85.5%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.58 45.0 4.75e-01 94.2% 100.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.17e-01 97.1% 77.6%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 45.0 3.86e-01 87.0% 64.7%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 44.0 3.64e-01 91.3% 44.3%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 52.0 3.41e-01 100.0% 46.6%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.06e-01 84.1% 27.3%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 47.0 3.16e-01 95.7% 68.0%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.56 49.0 3.77e-01 100.0% 72.2%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 50.0 4.07e-01 98.6% 79.5%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 47.0 3.73e-01 100.0% 53.9%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 48.0 3.49e-01 98.6% 91.4%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 41.0 3.89e-01 82.6% 78.4%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.23e-01 78.3% 56.7%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.75e-01 85.5% 77.0%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 41.0 2.60e-01 79.7% 85.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 2.89e-01 84.1% 27.2%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 43.0 3.13e-01 88.4% 53.8%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 45.0 3.75e-01 91.3% 80.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 45.0 3.32e-01 97.1% 36.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.49e-01 92.8% 72.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.53e-01 85.5% 15.0%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.57e-01 84.1% 45.5%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.19e-01 89.9% 43.9%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.76e-01 100.0% 62.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4958733 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.81 53.0 5.08e-01 84.1% 58.7%
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.80 62.0 6.17e-01 87.0% 80.0%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.74 63.0 5.85e-01 92.8% 80.0%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.73 55.0 5.92e-01 92.8% 93.3%
3981185 241.1.1.25 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.72 52.0 4.32e-01 75.4% 73.0%
3270840 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.69 48.0 4.41e-01 72.5% 64.4%
3221612 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.68 51.0 3.48e-01 78.3% 51.1%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 43.0 2.89e-01 72.5% 16.7%
4000746 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 48.0 4.49e-01 76.8% 70.8%
3414531 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 46.0 4.14e-01 71.0% 58.9%
4890947 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 51.0 4.35e-01 82.6% 60.7%
3401904 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 48.0 4.13e-01 76.8% 56.4%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 49.0 4.54e-01 81.2% 73.3%
1148074 3400.1.1.1 a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.66 54.0 3.77e-01 89.9% 84.7%
3180248 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.65 45.0 4.00e-01 72.5% 92.0%
3701440 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 47.0 4.31e-01 76.8% 66.7%
5014493 331.3.1.12 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.64 49.0 3.49e-01 84.1% 26.1%
5046585 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.64 51.0 5.28e-01 87.0% 95.4%
5792 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.64 57.0 4.75e-01 100.0% 87.6%
4927211 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.64 49.0 4.11e-01 82.6% 57.5%
3183393 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 48.0 4.35e-01 81.2% 63.2%
3513247 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 47.0 4.25e-01 78.3% 62.1%
3727505 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 44.0 3.92e-01 72.5% 60.0%
3801954 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.64 45.0 2.80e-01 73.9% 65.4%
4960515 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 45.0 3.84e-01 75.4% 50.4%
3698579 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 47.0 4.05e-01 95.7% 50.0%
3924796 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.63 50.0 4.25e-01 87.0% 65.2%
3583988 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 46.0 3.89e-01 82.6% 48.2%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.62 51.0 4.11e-01 87.0% 80.0%
4992030 632.1.1.40 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF3536 0.62 55.0 3.93e-01 100.0% 35.6%
4926979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 4.28e-01 91.3% 64.3%
3534580 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 46.0 3.80e-01 84.1% 44.8%
4928516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 4.34e-01 94.2% 66.9%
4979423 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 4.13e-01 95.7% 61.5%
5051444 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 44.0 3.46e-01 81.2% 71.0%
2552758 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.59 52.0 4.16e-01 98.6% 73.7%
5039391 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.67e-01 79.7% 22.8%
3441723 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 43.0 2.81e-01 78.3% 80.9%
4836809 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.58 48.0 3.61e-01 94.2% 81.6%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.57 51.0 4.16e-01 98.6% 78.9%
3684031 7512.1.1.1 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.57 40.0 2.79e-01 75.4% 29.1%
3960834 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 43.0 3.63e-01 84.1% 47.5%
4002901 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 45.0 3.58e-01 87.0% 53.6%
5049690 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.49e-01 85.5% 42.9%
3820829 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.56 46.0 2.97e-01 88.4% 73.1%
4381937 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.56 44.0 2.81e-01 85.5% 20.6%
5014277 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 43.0 3.98e-01 81.2% 82.4%
4946341 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.56 45.0 3.07e-01 89.9% 24.9%
3748485 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.56 49.0 3.55e-01 98.6% 41.5%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.55 45.0 3.64e-01 88.4% 85.4%
4439854 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.52e-01 88.4% 20.4%
5048520 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 45.0 3.82e-01 89.9% 65.2%
5048095 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.54 46.0 3.07e-01 91.3% 37.2%
4857588 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 45.0 3.15e-01 95.7% 58.8%
4955776 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.53 38.0 2.99e-01 75.4% 70.9%
4040004 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.53 45.0 2.86e-01 94.2% 32.4%
4027965 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 2.64e-01 84.1% 17.6%
3402824 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.53 39.0 2.42e-01 78.3% 71.0%
3592234 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.73e-01 91.3% 92.7%
4957480 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.50 42.0 2.66e-01 94.2% 82.9%