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ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00375

Bact-Vir

ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00375

Identity

Kingdom:
phage

Quality

89.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-196
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.64e-01 93.7% 91.9%
3sqrA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 48.0 3.86e-01 93.7% 87.5%
3pnrB00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 4.30e-01 93.7% 96.1%
3njfA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 47.0 4.53e-01 93.7% 99.1%
2z1pA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.19e-01 93.7% 98.5%
4bxsV03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 48.0 3.28e-01 94.7% 39.9%
3t9wA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 47.0 4.22e-01 94.7% 74.8%
6evgA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.55 48.0 4.38e-01 100.0% 93.9%
3abgB03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 43.0 3.60e-01 92.6% 67.2%
3zx1A01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 45.0 3.94e-01 100.0% 81.2%
3kw8A02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 45.0 4.05e-01 94.7% 69.2%
4c4aA04 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.52 45.0 3.77e-01 94.7% 61.5%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.52 33.0 3.85e-01 70.5% 96.9%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.74e-01 92.6% 85.2%
2r7eA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 43.0 3.90e-01 95.8% 77.4%
4p02B03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.81e-01 95.8% 94.4%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.79e-01 90.5% 73.8%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.50 41.0 3.02e-01 93.7% 74.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244629 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.65 56.0 4.96e-01 94.7% 80.0%
3994751 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 55.0 4.94e-01 95.8% 91.1%
3244928 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.62 53.0 4.78e-01 95.8% 86.5%
3919950 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 54.0 5.08e-01 95.8% 87.0%
5056154 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.62 50.0 4.29e-01 88.4% 100.0%
3628458 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.62 51.0 4.92e-01 90.5% 95.5%
3218275 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 52.0 4.78e-01 95.8% 89.6%
3219057 10.32.1.308 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CUB_M02D8_5_7th 0.60 52.0 4.94e-01 96.8% 91.3%
3731316 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 52.0 4.95e-01 95.8% 90.9%
3390403 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 49.0 4.20e-01 96.8% 90.0%
3228364 2006.1.6.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.56 45.0 2.98e-01 88.4% 21.2%
3497224 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.15e-01 92.6% 80.7%
3917546 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.37e-01 97.9% 86.3%
4985230 11.1.1.1427 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7524 0.54 45.0 4.29e-01 93.7% 76.5%
4542712 3698.1.1.2 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.53 46.0 3.63e-01 94.7% 54.0%
3241262 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 4.03e-01 100.0% 93.3%
4285426 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.53 44.0 3.75e-01 93.7% 83.6%
3220825 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 3.27e-01 88.4% 40.4%
5062579 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 4.18e-01 100.0% 94.7%
4427479 3698.1.1.0 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain 0.52 45.0 3.69e-01 95.8% 94.4%
4149366 11.1.1.850 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.52 38.0 3.52e-01 77.9% 64.0%
3548304 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 42.0 4.16e-01 92.6% 100.0%
5039552 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.51 43.0 4.02e-01 95.8% 76.8%
3869391 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 4.04e-01 89.5% 97.0%
3702568 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.67e-01 77.9% 100.0%
3938615 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.89e-01 87.4% 92.5%
3925087 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.51 36.0 2.68e-01 100.0% 29.0%
3254832 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 4.13e-01 86.3% 91.1%
3508093 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.50 42.0 3.46e-01 95.8% 88.9%
5040585 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.50 43.0 3.94e-01 95.8% 73.6%
D2 high residues 233-318
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 63.0 6.41e-01 97.7% 96.5%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 50.0 4.97e-01 97.7% 73.3%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 50.0 4.90e-01 97.7% 71.0%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 50.0 5.47e-01 97.7% 94.4%
2m5sA00 2.40.30.240 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 59.0 5.19e-01 97.7% 95.2%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 5.44e-01 96.5% 100.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.14e-01 74.4% 100.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 52.0 5.45e-01 97.7% 97.5%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 42.0 3.62e-01 77.9% 43.3%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.63 55.0 4.72e-01 98.8% 94.4%
5eanA01 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 54.0 4.99e-01 95.3% 79.6%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 43.0 4.52e-01 90.7% 83.1%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 50.0 5.24e-01 95.3% 100.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.67e-01 80.2% 97.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.49e-01 82.6% 87.2%
2dy3D01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 51.0 4.58e-01 100.0% 76.4%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.57 44.0 3.80e-01 98.8% 50.7%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 50.0 4.80e-01 97.7% 94.8%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 50.0 4.88e-01 97.7% 92.6%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 4.41e-01 86.0% 81.9%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 4.20e-01 70.9% 95.5%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.19e-01 88.4% 82.7%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.54 46.0 4.60e-01 93.0% 100.0%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.29e-01 96.5% 78.2%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.80e-01 100.0% 52.2%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 45.0 3.86e-01 97.7% 58.0%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 45.0 4.40e-01 93.0% 100.0%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.53 44.0 4.36e-01 97.7% 88.9%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.52 35.0 3.86e-01 72.1% 92.2%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 30.0 3.10e-01 84.9% 57.0%
5h4cB00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.87e-01 100.0% 91.1%
4xjcF00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.51 43.0 3.58e-01 100.0% 68.6%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.51 37.0 3.45e-01 79.1% 80.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3594588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 66.0 6.34e-01 96.5% 95.8%
3615570 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 66.0 5.90e-01 97.7% 97.4%
3969204 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 55.0 5.89e-01 97.7% 94.7%
4316004 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 52.0 5.23e-01 97.7% 77.6%
4066146 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 54.0 5.02e-01 97.7% 66.7%
3204011 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 51.0 5.10e-01 97.7% 74.4%
4038642 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 50.0 5.44e-01 97.7% 94.3%
3291083 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.67 61.0 6.00e-01 98.8% 93.3%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 53.0 5.62e-01 98.8% 97.3%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 53.0 4.86e-01 100.0% 67.3%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 51.0 5.14e-01 98.8% 84.7%
4854958 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 47.0 4.61e-01 97.7% 70.8%
3250056 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 4.97e-01 96.5% 87.2%
3530247 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 44.0 4.99e-01 73.3% 96.9%
3602819 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 5.34e-01 95.3% 86.3%
3255902 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.48e-01 80.2% 77.5%
5072949 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 45.0 5.00e-01 93.0% 100.0%
3574784 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 57.0 5.26e-01 100.0% 80.0%
3369214 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.62 56.0 5.10e-01 96.5% 80.9%
3691943 1.1.7.32 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat 0.62 53.0 4.79e-01 97.7% 76.8%
3805726 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 55.0 4.91e-01 96.5% 97.5%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 49.0 4.99e-01 97.7% 87.2%
3277206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.86e-01 81.4% 89.7%
5010031 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 46.0 4.15e-01 79.1% 60.9%
3867384 4.1.1.50 beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.61 45.0 4.71e-01 79.1% 98.8%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 4.77e-01 79.1% 92.0%
3735267 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 54.0 5.45e-01 97.7% 98.8%
3415428 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.60 52.0 4.90e-01 97.7% 83.8%
3571974 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.60 52.0 4.79e-01 100.0% 79.1%
5057245 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.58 51.0 5.08e-01 97.7% 92.2%
3388425 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.58 44.0 4.17e-01 80.2% 95.0%
3513925 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.58 41.0 4.21e-01 76.7% 98.8%
4182559 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.57 51.0 4.97e-01 100.0% 100.0%
3264029 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.74e-01 96.5% 91.8%
3601313 3613.1.1.0 beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.57 46.0 4.30e-01 87.2% 85.7%
4628116 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.57 41.0 3.96e-01 79.1% 87.6%
3965822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.76e-01 93.0% 95.6%
4439947 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.57 41.0 3.95e-01 79.1% 87.6%
4932128 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.57 50.0 5.06e-01 97.7% 97.6%
3415703 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 49.0 4.82e-01 97.7% 96.8%
4598590 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.55 39.0 4.23e-01 80.2% 91.4%
3461921 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.55 48.0 4.59e-01 97.7% 100.0%
4134464 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.54 39.0 3.79e-01 77.9% 90.0%
3925982 70.2.1.0 beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.54 46.0 4.56e-01 97.7% 98.9%
3601703 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 3.77e-01 100.0% 92.0%
3404531 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.54 46.0 4.37e-01 97.7% 94.3%
3966724 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 4.41e-01 95.3% 96.8%
None 0.51 44.0 3.58e-01 100.0% 68.0%
D3 high residues 327-428
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ztnA02 2.40.30.190 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 62.0 5.61e-01 93.1% 88.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 47.0 4.94e-01 90.2% 75.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 48.0 5.52e-01 92.2% 100.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 32.0 3.88e-01 91.2% 76.6%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.62 55.0 4.90e-01 97.1% 96.5%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 50.0 5.15e-01 93.1% 95.9%
4jzjC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 4.08e-01 94.1% 85.7%
4e8dA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 38.0 3.52e-01 93.1% 48.6%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 43.0 4.82e-01 86.3% 100.0%
6z0jA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.59 37.0 3.52e-01 92.2% 53.7%
1tq5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 42.0 4.12e-01 99.0% 70.4%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 44.0 3.50e-01 91.2% 39.0%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 52.0 4.67e-01 97.1% 85.4%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 44.0 4.75e-01 87.3% 100.0%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 45.0 4.25e-01 98.0% 69.0%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 48.0 4.74e-01 92.2% 100.0%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 4.27e-01 99.0% 77.6%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 30.0 3.56e-01 90.2% 75.7%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.56 36.0 3.84e-01 82.4% 76.7%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 4.19e-01 99.0% 76.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 4.42e-01 88.2% 100.0%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 28.0 3.26e-01 90.2% 67.6%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.54 46.0 4.50e-01 95.1% 93.8%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 4.24e-01 89.2% 80.9%
3klkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 44.0 3.97e-01 91.2% 70.6%
1hkvA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 44.0 3.70e-01 92.2% 51.9%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 4.13e-01 94.1% 96.9%
1sefA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 39.0 3.60e-01 92.2% 60.3%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.53 43.0 3.35e-01 91.2% 39.7%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.90e-01 90.2% 98.6%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.99e-01 83.3% 89.1%
3c7fA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.82e-01 91.2% 94.4%
1fmd100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.45e-01 92.2% 65.8%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.61e-01 92.2% 92.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078307 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.73 52.0 6.06e-01 87.3% 100.0%
3512272 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 52.0 5.97e-01 90.2% 100.0%
3103203 1.1.7.35 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.71 56.0 5.95e-01 93.1% 94.4%
3975132 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 49.0 5.23e-01 96.1% 81.1%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 48.0 5.00e-01 92.2% 77.9%
4854958 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 48.0 4.93e-01 97.1% 76.0%
3291083 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.68 55.0 5.88e-01 91.2% 96.7%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 47.0 5.35e-01 92.2% 100.0%
1954233 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.66 54.0 5.76e-01 90.2% 98.9%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 47.0 5.29e-01 90.2% 100.0%
4991129 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 47.0 5.08e-01 93.1% 95.2%
3403550 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 41.0 4.21e-01 92.2% 68.0%
4460819 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 54.0 5.49e-01 92.2% 93.0%
4205165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 47.0 5.06e-01 92.2% 100.0%
3250056 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 4.78e-01 90.2% 90.4%
5057234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.59e-01 76.5% 95.7%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.89e-01 94.1% 97.6%
3960404 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.58 39.0 3.54e-01 93.1% 51.1%
5062269 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.58 40.0 3.91e-01 92.2% 64.3%
2528374 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 34.0 3.91e-01 89.2% 77.9%
4972682 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 40.0 3.97e-01 93.1% 70.5%
4028501 240.2.1.1 a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit › RNA_pol_A_bac 0.55 34.0 3.18e-01 97.1% 49.6%
3248952 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.97e-01 89.2% 85.9%
3602202 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 44.0 3.69e-01 94.1% 98.4%
3569095 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.52 36.0 3.44e-01 92.2% 59.2%
159821 10.32.1.12 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.52 43.0 3.90e-01 90.2% 98.6%
1138674 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.52 40.0 3.99e-01 83.3% 89.1%
3582182 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.52 44.0 3.58e-01 93.1% 54.2%
1316605 10.32.1.50 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.52 43.0 4.00e-01 92.2% 92.4%
3968621 10.32.1.280 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF3999 0.52 43.0 4.15e-01 93.1% 96.7%
3895220 10.32.1.69 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B 0.51 43.0 3.46e-01 97.1% 83.6%
3211095 10.32.1.28 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.50 42.0 3.62e-01 94.1% 88.8%
3896267 10.32.1.69 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B 0.50 42.0 3.37e-01 96.1% 79.6%
3605972 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 4.16e-01 94.1% 100.0%
D4 medium residues 1-58
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.79 70.0 5.65e-01 100.0% 70.0%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.79 63.0 5.70e-01 89.7% 82.7%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 67.0 4.46e-01 96.6% 80.2%
2p0nA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.75 60.0 4.44e-01 91.4% 42.9%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 57.0 4.60e-01 89.7% 53.1%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 53.0 4.40e-01 84.5% 91.0%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 52.0 4.19e-01 87.9% 44.4%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 52.0 4.47e-01 89.7% 69.1%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.66 59.0 3.52e-01 98.3% 17.6%
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.63 54.0 5.40e-01 98.3% 98.4%
4d6wB02 6.10.140.740 Special › Helix non-globular › Helix Hairpins › 0.59 45.0 4.03e-01 89.7% 70.7%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 43.0 2.98e-01 84.5% 21.6%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 41.0 2.71e-01 82.8% 39.4%
4fzwA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.50 37.0 3.70e-01 81.0% 77.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947260 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 55.0 5.00e-01 100.0% 68.8%