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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00165

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00165

Identity

Kingdom:
phage

Quality

68.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-89
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 53.0 4.49e-01 89.9% 41.5%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 5.65e-01 91.3% 58.8%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 51.0 4.01e-01 89.9% 33.8%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 49.0 4.38e-01 88.4% 46.8%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 4.30e-01 81.2% 40.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 4.91e-01 87.0% 59.2%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.18e-01 88.4% 40.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 3.71e-01 78.3% 35.9%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.28e-01 88.4% 45.3%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.52e-01 87.0% 58.0%
2js3A01 1.10.287.780 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains 0.65 34.0 3.36e-01 81.2% 43.4%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 3.79e-01 84.1% 34.5%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 3.98e-01 84.1% 42.3%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.33e-01 94.2% 47.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 3.93e-01 84.1% 51.6%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.21e-01 95.7% 45.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.17e-01 81.2% 53.3%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 3.91e-01 82.6% 44.7%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.59e-01 84.1% 32.8%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.87e-01 88.4% 43.1%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 3.70e-01 84.1% 39.9%
1e6vB02 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.60 42.0 2.76e-01 72.5% 43.9%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.52e-01 81.2% 73.4%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.79e-01 88.4% 42.9%
5llmA00 1.10.3860.10 Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter 0.60 52.0 3.18e-01 94.2% 72.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 3.45e-01 72.5% 45.5%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.75e-01 73.9% 57.1%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.45e-01 79.7% 37.7%
3v3kD00 1.20.1260.90 Mainly Alpha › Up-down Bundle › Ferritin › 0.59 41.0 3.14e-01 73.9% 34.8%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 38.0 3.07e-01 72.5% 31.8%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 44.0 4.61e-01 88.4% 90.5%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 45.0 3.05e-01 85.5% 69.7%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 47.0 3.15e-01 92.8% 42.5%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.56 48.0 4.28e-01 97.1% 90.9%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 45.0 3.06e-01 87.0% 76.8%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.46e-01 71.0% 53.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.40e-01 84.1% 44.0%
2vd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 34.0 2.81e-01 76.8% 36.3%
5lnkJ01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.53 41.0 3.14e-01 94.2% 34.9%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029396 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.87 53.0 4.36e-01 88.4% 37.4%
4025655 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.85 53.0 4.70e-01 89.9% 46.3%
4973468 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.84 53.0 4.11e-01 89.9% 32.1%
3538408 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.83 52.0 4.60e-01 88.4% 46.3%
3785619 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.83 53.0 4.36e-01 89.9% 39.1%
4463557 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.81 51.0 4.52e-01 88.4% 46.3%
3931606 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.81 52.0 4.28e-01 89.9% 39.1%
5066236 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.80 51.0 3.95e-01 94.2% 31.0%
4178886 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.80 51.0 4.46e-01 94.2% 45.0%
3726808 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.77 58.0 4.16e-01 100.0% 30.0%
3396714 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.77 61.0 4.67e-01 84.1% 72.4%
3718200 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 57.0 4.54e-01 78.3% 76.8%
3630462 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 53.0 4.08e-01 73.9% 39.3%
5081618 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 49.0 4.03e-01 87.0% 39.2%
5049162 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 63.0 4.64e-01 92.8% 69.4%
4996551 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 54.0 4.26e-01 78.3% 67.1%
5024938 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 57.0 4.55e-01 84.1% 79.2%
4410759 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 56.0 4.61e-01 81.2% 67.8%
5069467 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 53.0 4.11e-01 78.3% 55.2%
4969864 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 53.0 4.18e-01 76.8% 83.1%
370599 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.72 56.0 4.33e-01 82.6% 41.3%
3229643 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 55.0 4.48e-01 82.6% 65.8%
4968041 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.69 55.0 4.39e-01 95.7% 42.1%
4661346 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 55.0 4.24e-01 84.1% 72.4%
3719561 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 46.0 3.00e-01 71.0% 16.8%
4191334 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 52.0 4.06e-01 87.0% 40.3%
4978596 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 58.0 4.80e-01 94.2% 52.8%
4990636 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 56.0 4.45e-01 87.0% 75.4%
3593736 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.68 49.0 4.31e-01 82.6% 52.0%
4564040 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 53.0 4.22e-01 84.1% 86.7%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 55.0 4.44e-01 88.4% 46.9%
5000789 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 50.0 4.30e-01 78.3% 56.2%
5005002 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.67 55.0 4.31e-01 89.9% 43.4%
4605893 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.67 52.0 4.16e-01 84.1% 42.9%
4027679 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 53.0 4.54e-01 84.1% 63.8%
4118829 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 52.0 4.12e-01 84.1% 72.9%
5060418 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 53.0 4.40e-01 85.5% 77.5%
4494181 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 52.0 4.08e-01 84.1% 91.0%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 53.0 4.26e-01 84.1% 49.6%
5046890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 4.02e-01 82.6% 40.7%
4086368 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.66 53.0 3.80e-01 88.4% 88.7%
3398317 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 52.0 3.91e-01 84.1% 82.5%
3710532 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 51.0 4.47e-01 84.1% 76.2%
3291221 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 53.0 4.25e-01 89.9% 45.7%
3771989 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 51.0 4.05e-01 84.1% 71.1%
2549573 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.65 49.0 3.89e-01 82.6% 40.0%
3957538 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.64 47.0 3.70e-01 78.3% 36.0%
3588306 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 52.0 4.10e-01 88.4% 43.6%
3287925 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 51.0 3.93e-01 87.0% 38.7%
4942548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.76e-01 82.6% 38.7%
4951142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 3.63e-01 75.4% 42.3%
4132207 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.62 47.0 3.75e-01 82.6% 40.0%
3290673 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 49.0 3.99e-01 88.4% 44.4%
5078958 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 47.0 4.21e-01 85.5% 60.0%
4939406 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 3.96e-01 98.6% 39.4%
4955353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.57e-01 71.0% 43.5%
4968065 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.50e-01 79.7% 35.5%
5045315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.98e-01 87.0% 53.0%
5019583 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.62e-01 72.5% 52.0%
4962040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.32e-01 78.3% 36.4%
5052081 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 3.69e-01 92.8% 68.5%
3640935 3543.1.1.4 alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.58 45.0 3.14e-01 85.5% 25.5%
5033276 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 48.0 3.71e-01 97.1% 43.7%
3764423 102.1.3.8 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C 0.55 39.0 3.16e-01 76.8% 40.8%
3538512 3892.1.1.0 alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II 0.55 43.0 3.35e-01 87.0% 38.1%
4990701 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 37.0 3.07e-01 71.0% 38.5%
3286591 101.1.2.612 alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 0.54 46.0 3.66e-01 98.6% 45.6%
3929673 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.54 37.0 2.95e-01 87.0% 33.3%
4968989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.44e-01 75.4% 57.6%
4966839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.46e-01 81.2% 52.4%
3574056 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.52 44.0 2.96e-01 94.2% 24.9%
3216039 109.4.1.1945 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2, HEAT_MROH2B_1st, HEAT_MROH2B_C 0.51 45.0 2.43e-01 98.6% 20.7%
2796357 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 40.0 3.25e-01 88.4% 44.0%