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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00198

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00198

Identity

Kingdom:
phage

Quality

74.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-141
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.70 48.0 4.34e-01 70.0% 88.0%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.70 48.0 3.44e-01 70.0% 77.4%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.68 54.0 4.19e-01 85.0% 51.2%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.67 58.0 5.92e-01 92.0% 96.8%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.67 57.0 5.62e-01 94.0% 86.0%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.67 56.0 5.87e-01 90.0% 100.0%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.67 49.0 5.50e-01 77.0% 96.2%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 46.0 4.09e-01 71.0% 88.6%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 45.0 3.86e-01 71.0% 92.0%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 45.0 3.85e-01 71.0% 50.0%
3v3sA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 54.0 3.93e-01 91.0% 60.6%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 42.0 4.79e-01 92.0% 97.2%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 43.0 4.11e-01 71.0% 87.0%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.62 47.0 4.20e-01 81.0% 69.0%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 44.0 3.92e-01 73.0% 68.3%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 42.0 3.87e-01 71.0% 84.2%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.61 49.0 4.74e-01 87.0% 76.5%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 49.0 3.42e-01 87.0% 39.7%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 42.0 3.58e-01 71.0% 89.7%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.86e-01 100.0% 92.1%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.55e-01 86.0% 85.8%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.60 45.0 4.24e-01 79.0% 78.0%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 46.0 3.40e-01 82.0% 100.0%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 41.0 3.29e-01 71.0% 72.6%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 3.94e-01 90.0% 92.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 41.0 3.52e-01 72.0% 70.8%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.59 50.0 3.93e-01 93.0% 69.2%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.58 49.0 4.14e-01 93.0% 92.9%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 44.0 3.21e-01 82.0% 42.6%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.57 39.0 3.80e-01 72.0% 76.1%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 45.0 3.12e-01 88.0% 59.2%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.11e-01 77.0% 53.1%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 3.34e-01 88.0% 96.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 34.0 4.14e-01 84.0% 98.4%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.87e-01 87.0% 36.7%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 45.0 4.04e-01 88.0% 97.1%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 50.0 3.66e-01 99.0% 87.2%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 48.0 3.28e-01 99.0% 80.5%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 47.0 3.41e-01 97.0% 65.2%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.27e-01 100.0% 64.3%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 48.0 3.49e-01 99.0% 59.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 41.0 3.83e-01 81.0% 65.8%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 44.0 3.30e-01 93.0% 81.4%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.53 45.0 3.51e-01 95.0% 86.2%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.07e-01 96.0% 49.4%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 41.0 2.93e-01 85.0% 33.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 40.0 4.15e-01 88.0% 86.3%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 40.0 3.56e-01 82.0% 68.5%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 43.0 2.97e-01 91.0% 95.2%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.54e-01 77.0% 95.9%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.42e-01 91.0% 79.0%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 40.0 3.97e-01 83.0% 89.2%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.35e-01 90.0% 66.5%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 44.0 3.09e-01 100.0% 92.5%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.66e-01 71.0% 78.5%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.15e-01 91.0% 45.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286944 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.77 53.0 4.89e-01 71.0% 93.6%
3808882 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.76 69.0 5.62e-01 97.0% 75.4%
4026643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 49.0 5.31e-01 95.0% 81.2%
3221077 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.73 48.0 5.33e-01 73.0% 85.0%
3730099 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 46.0 5.19e-01 75.0% 89.2%
3286021 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.69 47.0 4.03e-01 70.0% 78.5%
3404834 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.68 44.0 4.84e-01 75.0% 81.2%
3283330 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.68 54.0 4.01e-01 85.0% 44.7%
3286246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 49.0 4.84e-01 76.0% 89.4%
3471678 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.67 46.0 3.87e-01 71.0% 70.3%
3362098 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.66 46.0 3.54e-01 71.0% 49.5%
3711273 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.66 43.0 4.10e-01 79.0% 57.9%
4968200 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.65 46.0 3.50e-01 72.0% 46.7%
4498032 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.65 52.0 4.05e-01 85.0% 67.6%
4370161 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.65 45.0 3.84e-01 71.0% 64.4%
4973139 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.65 45.0 3.89e-01 71.0% 67.1%
4469416 222.1.1.5 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.65 45.0 4.00e-01 71.0% 86.8%
3965735 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.65 43.0 4.67e-01 70.0% 80.0%
3388794 71.2.1.0 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like 0.65 49.0 3.68e-01 80.0% 43.8%
3591097 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 46.0 3.42e-01 76.0% 49.8%
3426108 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.63 53.0 3.62e-01 90.0% 37.4%
3207771 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.62 49.0 3.95e-01 85.0% 47.7%
3665166 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 46.0 3.27e-01 80.0% 41.3%
4528719 4.1.1.438 beta barrels › SH3 › SH3 › SH3 › PF27440 0.61 37.0 4.35e-01 71.0% 90.8%
3851797 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 42.0 3.60e-01 71.0% 58.8%
3177704 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.61 42.0 3.20e-01 71.0% 45.8%
5009919 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 50.0 3.97e-01 92.0% 51.7%
3695979 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.60 44.0 4.19e-01 77.0% 72.6%
3916526 719.1.1.1 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.59 45.0 4.14e-01 81.0% 74.6%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.59 45.0 2.75e-01 81.0% 21.5%
3595871 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.57 40.0 2.82e-01 73.0% 99.7%
3523579 883.1.1.10 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L 0.56 41.0 3.19e-01 75.0% 64.3%
3362286 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 49.0 3.95e-01 99.0% 55.1%
3998279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 40.0 3.96e-01 89.0% 69.1%
4646778 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.56 50.0 3.62e-01 96.0% 50.2%
4942549 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 45.0 3.29e-01 90.0% 79.7%
4274290 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 43.0 3.07e-01 83.0% 97.4%
3412007 292.2.1.13 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Chitin_bind_4 0.55 37.0 4.32e-01 84.0% 98.6%
5084039 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.55 49.0 3.45e-01 97.0% 60.2%
4125244 3186.1.1.1 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.55 41.0 3.94e-01 87.0% 67.8%
3258354 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.55 39.0 2.73e-01 75.0% 95.9%
3389299 12.1.1.60 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.55 41.0 4.46e-01 97.0% 97.5%
3843214 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.55 38.0 2.34e-01 72.0% 19.6%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.55 41.0 3.94e-01 84.0% 67.5%
3517916 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.55 38.0 2.45e-01 72.0% 26.0%
3697960 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.54 43.0 3.75e-01 84.0% 70.0%
4279265 2004.1.1.481 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.54 38.0 2.47e-01 72.0% 28.2%
5081327 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 43.0 4.15e-01 89.0% 77.0%
4512246 2004.1.1.615 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.53 37.0 2.28e-01 72.0% 19.0%
3937752 2004.1.1.615 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.53 37.0 2.29e-01 72.0% 20.4%
1169103 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 46.0 3.06e-01 98.0% 59.4%
3280079 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 38.0 3.49e-01 78.0% 61.5%
5044375 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.51 40.0 3.01e-01 84.0% 52.3%