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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00205

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00205

Identity

Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-103
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.64 31.0 4.07e-01 76.0% 83.6%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.62 31.0 3.93e-01 76.0% 83.9%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 4.22e-01 76.0% 91.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 32.0 3.20e-01 70.0% 47.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 42.0 3.86e-01 74.0% 100.0%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.58 29.0 3.67e-01 70.0% 85.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 4.15e-01 84.0% 97.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 4.06e-01 75.0% 100.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.34e-01 86.0% 91.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 47.0 4.26e-01 91.0% 85.0%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 39.0 3.50e-01 74.0% 97.8%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.54 42.0 4.01e-01 84.0% 87.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.57e-01 75.0% 70.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.75e-01 75.0% 92.3%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.54e-01 79.0% 74.2%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.10e-01 70.0% 97.1%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.50 33.0 2.85e-01 70.0% 41.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4128526 3600.1.1.4 ↗ alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › Exonuc_VII_L 0.81 23.0 2.12e-01 90.0% 22.4%
4105624 148.1.3.245 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Exonuc_VII_L 0.76 23.0 2.48e-01 91.0% 33.3%
4151308 192.15.1.86 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Exonuc_VII_L 0.74 23.0 2.12e-01 91.0% 24.0%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.16e-01 87.0% 100.0%
4167784 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.66 39.0 4.54e-01 84.0% 82.9%
4381526 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.63 39.0 4.49e-01 76.0% 88.6%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 43.0 4.40e-01 86.0% 75.8%
4411726 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.61 38.0 4.52e-01 72.0% 93.8%
4050439 5046.1.1.148 ↗ extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › Exonuc_VII_L 0.61 23.0 2.09e-01 96.0% 26.7%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.61 40.0 4.34e-01 83.0% 81.2%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.61 38.0 4.50e-01 81.0% 100.0%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 36.0 4.29e-01 82.0% 96.7%
3928803 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.59 36.0 2.92e-01 77.0% 31.0%
5077568 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.58 34.0 4.01e-01 74.0% 82.9%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.16e-01 94.0% 90.0%
3516536 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.58e-01 70.0% 89.2%
4963650 4.1.1.488 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7346 0.56 29.0 3.54e-01 74.0% 85.5%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 31.0 2.71e-01 78.0% 35.5%
4270602 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 37.0 2.47e-01 74.0% 88.7%
154312 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.51 32.0 3.69e-01 77.0% 90.0%
4260047 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.51 37.0 2.44e-01 74.0% 72.6%
3178950 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 35.0 3.62e-01 71.0% 100.0%