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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00278

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00278

Identity

Kingdom:
phage

Quality

92.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-68
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.72 49.0 3.08e-01 70.9% 31.2%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 54.0 3.37e-01 81.8% 63.1%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.66 49.0 3.10e-01 80.0% 59.3%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.65 43.0 4.25e-01 78.2% 64.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 3.70e-01 70.9% 85.9%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.64 50.0 3.10e-01 85.5% 33.4%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.32e-01 80.0% 69.4%
1u0tB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.63 37.0 2.75e-01 80.0% 23.7%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.72e-01 96.4% 68.0%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 44.0 2.99e-01 78.2% 72.8%
7a0hA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.61 40.0 3.34e-01 76.4% 36.6%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.21e-01 76.4% 73.0%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.60 46.0 2.84e-01 100.0% 13.0%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.73e-01 96.4% 70.8%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.76e-01 74.5% 57.7%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.60 41.0 2.78e-01 70.9% 79.4%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.60 47.0 3.48e-01 87.3% 54.1%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.66e-01 83.6% 60.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.58 38.0 3.35e-01 76.4% 47.4%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 39.0 2.98e-01 72.7% 36.0%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 2.88e-01 70.9% 35.9%
2hdwA02 1.10.10.800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 44.0 3.91e-01 96.4% 86.8%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 38.0 2.93e-01 72.7% 97.6%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 38.0 3.13e-01 72.7% 80.0%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.54 47.0 3.17e-01 98.2% 61.9%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.53 42.0 3.33e-01 85.5% 80.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.80e-01 89.1% 62.5%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.53 35.0 2.67e-01 70.9% 86.6%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.68e-01 90.9% 69.4%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 39.0 3.34e-01 87.3% 57.6%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 36.0 2.77e-01 78.2% 70.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620102 5067.1.1.3 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.71 54.0 2.95e-01 81.8% 31.6%
3597508 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.70 48.0 4.20e-01 70.9% 48.8%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 48.0 3.99e-01 70.9% 60.0%
3429600 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.70 47.0 3.58e-01 70.9% 40.8%
3292448 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.70 46.0 3.06e-01 70.9% 18.5%
3926333 5054.1.1.59 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.70 49.0 2.93e-01 74.5% 14.3%
2966548 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.68 57.0 3.97e-01 94.5% 85.8%
4032391 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.67 51.0 4.33e-01 80.0% 64.7%
3304324 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.66 47.0 3.51e-01 74.5% 96.3%
3735991 109.4.1.526 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.66 51.0 2.90e-01 83.6% 21.1%
3716174 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 46.0 3.65e-01 72.7% 47.3%
4045825 1166.1.1.1 alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.66 45.0 3.13e-01 72.7% 55.0%
7688 808.1.1.2 a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arteri_nucleo 0.65 43.0 4.25e-01 78.2% 64.9%
3723153 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.65 46.0 2.71e-01 74.5% 44.7%
4027635 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 44.0 3.99e-01 70.9% 93.3%
3952539 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.64 48.0 3.01e-01 80.0% 33.7%
3742496 2006.1.6.19 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 0.64 47.0 3.09e-01 78.2% 31.9%
4240628 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.64 50.0 3.43e-01 92.7% 78.6%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.63 55.0 3.48e-01 98.2% 67.5%
3923920 148.1.1.8 alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa 0.63 52.0 4.20e-01 90.9% 82.9%
3937251 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.63 55.0 3.50e-01 98.2% 75.3%
3726808 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.63 49.0 3.38e-01 83.6% 71.7%
3288748 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.62 47.0 2.88e-01 100.0% 12.9%
5064344 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.62 50.0 3.64e-01 89.1% 56.8%
4188114 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 44.0 3.89e-01 76.4% 57.5%
3938116 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 43.0 2.83e-01 78.2% 79.6%
2417935 101.1.2.192 alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.59 47.0 4.26e-01 83.6% 67.1%
3487912 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 3.67e-01 85.5% 56.4%
3273185 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.59 49.0 2.88e-01 94.5% 13.9%
3213954 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.59 52.0 3.63e-01 100.0% 56.3%
4162788 4126.1.1.6 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.59 52.0 2.99e-01 100.0% 75.0%
3740646 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.58 44.0 3.83e-01 76.4% 56.2%
3261727 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.58 46.0 3.68e-01 89.1% 69.6%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 50.0 3.46e-01 100.0% 56.0%
4179803 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 50.0 3.47e-01 100.0% 54.0%
4977640 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.58 42.0 3.21e-01 76.4% 50.4%
3937789 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.57 42.0 2.96e-01 78.2% 94.5%
2698385 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.57 51.0 3.75e-01 100.0% 62.8%
4182876 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 47.0 3.28e-01 100.0% 53.2%
3587282 142.1.1.10 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.56 39.0 3.57e-01 72.7% 60.0%
4029394 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 49.0 3.40e-01 100.0% 47.7%
3392896 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 42.0 3.60e-01 74.5% 52.9%
4008061 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.97e-01 96.4% 64.0%
3481546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.68e-01 70.9% 72.3%
3687407 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.55 38.0 3.50e-01 90.9% 55.7%
4024318 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.50e-01 80.0% 70.6%
4013126 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 39.0 3.43e-01 80.0% 77.8%
None 0.54 44.0 2.93e-01 98.2% 24.7%
4003270 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.54 42.0 2.59e-01 85.5% 40.3%
3167163 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.53 41.0 3.44e-01 83.6% 64.2%
4933311 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 44.0 3.30e-01 96.4% 92.0%
5073006 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 43.0 3.20e-01 92.7% 98.1%
3217172 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.53 42.0 3.05e-01 85.5% 87.6%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.52 44.0 3.51e-01 100.0% 65.0%
4057677 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.52 41.0 3.57e-01 90.9% 56.5%
5073398 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 43.0 3.14e-01 90.9% 99.3%
3721713 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.43e-01 96.4% 60.0%
3919567 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.50 43.0 3.62e-01 98.2% 63.2%
3981752 829.1.1.1 a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.50 44.0 3.27e-01 94.5% 70.0%
4833284 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.50 40.0 2.79e-01 98.2% 27.2%