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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00343
Bact-VirALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00343
Identity
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-84_170-214
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wh3A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 25.0 | 3.21e-01 | 98.4% | 80.3% |
| 2lrwA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 25.0 | 3.05e-01 | 98.4% | 70.5% |
| 6ovpA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.50 | 33.0 | 3.45e-01 | 97.6% | 71.2% |
D2
high
residues 88-165
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a0iA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.66 | 46.0 | 4.55e-01 | 100.0% | 68.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 45.0 | 4.75e-01 | 97.4% | 90.9% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.60 | 53.0 | 3.80e-01 | 100.0% | 61.0% |
| 3smzA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 40.0 | 3.78e-01 | 70.5% | 81.4% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.59 | 44.0 | 3.85e-01 | 100.0% | 50.8% |
| 1pjqB05 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.59 | 44.0 | 3.84e-01 | 100.0% | 50.0% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.59 | 43.0 | 3.93e-01 | 100.0% | 56.2% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 43.0 | 3.96e-01 | 100.0% | 59.1% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 43.0 | 4.49e-01 | 100.0% | 94.1% |
| 1wwhA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 39.0 | 4.00e-01 | 70.5% | 100.0% |
| 1whxA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 41.0 | 3.69e-01 | 78.2% | 70.3% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 34.0 | 3.11e-01 | 100.0% | 45.7% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 40.0 | 3.35e-01 | 83.3% | 43.0% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.55 | 46.0 | 4.08e-01 | 100.0% | 87.0% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 2.81e-01 | 100.0% | 34.3% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 37.0 | 3.55e-01 | 80.8% | 59.4% |
| 2f9jA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 40.0 | 4.06e-01 | 80.8% | 100.0% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.24e-01 | 100.0% | 47.8% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 33.0 | 3.09e-01 | 100.0% | 47.0% |
| 3hrzC01 | 2.20.210.20 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › | 0.54 | 32.0 | 3.66e-01 | 73.1% | 91.8% |
| 6eibD00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 44.0 | 3.56e-01 | 92.3% | 96.2% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.53 | 46.0 | 3.54e-01 | 100.0% | 48.9% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.52 | 41.0 | 3.83e-01 | 100.0% | 67.3% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 44.0 | 3.74e-01 | 96.2% | 72.2% |
| 2gnrA01 | 6.10.30.10 | Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.51 | 31.0 | 3.31e-01 | 96.2% | 68.1% |
| 1urrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.51e-01 | 78.2% | 85.6% |
| 3q8pB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 44.0 | 3.99e-01 | 100.0% | 93.5% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 44.0 | 4.14e-01 | 100.0% | 90.6% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 40.0 | 3.09e-01 | 89.7% | 41.4% |
| 2vtfA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 3.41e-01 | 100.0% | 95.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.63 | 43.0 | 4.40e-01 | 70.5% | 96.0% |
| 3929887 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.62 | 49.0 | 4.45e-01 | 87.2% | 86.4% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.62 | 38.0 | 4.32e-01 | 74.4% | 87.3% |
| 3786042 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.61 | 42.0 | 3.95e-01 | 70.5% | 84.2% |
| 4979481 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.59 | 40.0 | 3.83e-01 | 70.5% | 83.3% |
| 3501768 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 40.0 | 4.16e-01 | 70.5% | 84.3% |
| 4992607 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.58 | 41.0 | 3.75e-01 | 74.4% | 74.3% |
| 3941016 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 50.0 | 4.25e-01 | 100.0% | 74.1% |
| 4943770 | 304.110.1.12 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › zf-HYPF | 0.57 | 40.0 | 3.62e-01 | 73.1% | 73.3% |
| 4031161 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.56 | 34.0 | 3.10e-01 | 100.0% | 43.6% |
| 5026329 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 33.0 | 3.65e-01 | 100.0% | 76.7% |
| 3285199 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.55 | 34.0 | 2.88e-01 | 100.0% | 38.4% |
| 2755642 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.55 | 38.0 | 2.87e-01 | 73.1% | 50.5% |
| 4339550 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.55 | 38.0 | 3.65e-01 | 74.4% | 88.4% |
| 5011613 | 101.1.2.225 ↗ | alpha arrays › HTH › HTH › winged helix domain › F-93_WHD | 0.54 | 33.0 | 3.16e-01 | 100.0% | 50.5% |
| 3602531 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 34.0 | 3.06e-01 | 100.0% | 44.5% |
| 4971296 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 34.0 | 3.44e-01 | 100.0% | 62.5% |
| 3232398 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 46.0 | 3.71e-01 | 97.4% | 82.6% |
| 3207538 | 221.1.2.9 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › TyrRSs_C | 0.53 | 47.0 | 4.22e-01 | 100.0% | 75.5% |
| 3873803 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.53 | 36.0 | 3.47e-01 | 70.5% | 88.9% |
| 3608700 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.53 | 41.0 | 3.22e-01 | 100.0% | 36.3% |
| 3743247 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.53 | 42.0 | 2.80e-01 | 89.7% | 80.3% |
| 5067388 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 33.0 | 3.35e-01 | 100.0% | 63.7% |
| 3315515 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.51 | 44.0 | 3.89e-01 | 100.0% | 82.5% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 2.79e-01 | 100.0% | 38.5% |
| 5027594 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 41.0 | 2.76e-01 | 92.3% | 87.0% |
| 3281724 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.50 | 35.0 | 2.98e-01 | 100.0% | 44.8% |