←Back to structures
ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00411
Bact-VirALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00411
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-70_116-223
Domain cluster:
rep: MN718199.1__QGZ16029.1__Kuja_0380__00038__D35-98_136-255
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08804.17 best | gp32 | 29.0 | 1.60e-06 | 95.9% | 47.8% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.83 | 78.0 | 6.68e-01 | 100.0% | 86.2% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 22.0 | 2.97e-01 | 86.9% | 59.2% |
| 2e2dC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 38.0 | 4.64e-01 | 82.1% | 100.0% |
| 3ckiB00 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 38.0 | 4.09e-01 | 82.8% | 76.9% |
| 5jpnC02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 38.0 | 3.70e-01 | 82.8% | 63.1% |
| 4ckbD03 | 2.40.50.830 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 4.07e-01 | 86.9% | 84.3% |
| 1mfnA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 26.0 | 3.17e-01 | 83.4% | 72.0% |
| 1uapA00 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 38.0 | 3.97e-01 | 84.8% | 86.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 378 | 2.1.1.45 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 | 0.81 | 77.0 | 6.66e-01 | 100.0% | 89.5% |
| 4439550 | 2.3.1.2 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NTR | 0.59 | 38.0 | 3.87e-01 | 82.8% | 65.0% |
| 4927408 | 2.3.1.0 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like | 0.58 | 39.0 | 4.31e-01 | 81.4% | 83.3% |
| 3767282 | 2.3.1.2 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NTR | 0.57 | 42.0 | 4.20e-01 | 84.1% | 73.3% |
| 3573308 | 922.1.1.1 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP_1 | 0.54 | 20.0 | 3.08e-01 | 82.8% | 83.6% |
| 3479052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 34.0 | 3.73e-01 | 85.5% | 79.1% |
| 3611807 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 4.32e-01 | 82.1% | 100.0% |
| 5037168 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.51 | 37.0 | 3.99e-01 | 83.4% | 86.4% |
| 3393395 | 2.3.1.11 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › Vein_beta-barrel | 0.50 | 37.0 | 3.85e-01 | 82.1% | 83.8% |
D2
medium
residues 71-115_227-261
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uskA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 38.0 | 2.98e-01 | 81.2% | 85.3% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.50 | 31.0 | 3.20e-01 | 80.0% | 65.8% |