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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00441
Bact-VirALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00441
Identity
- Kingdom:
- phage
Quality
85.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-89
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.76 | 68.0 | 5.96e-01 | 100.0% | 96.2% |
| 1xl7A01 | 1.10.275.20 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase | 0.75 | 57.0 | 4.58e-01 | 83.0% | 76.7% |
| 1u2zA01 | 1.10.260.170 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.71 | 54.0 | 3.74e-01 | 86.8% | 64.4% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 53.0 | 4.88e-01 | 86.8% | 91.7% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 52.0 | 3.37e-01 | 86.8% | 19.3% |
| 3u8zD02 | 1.20.80.60 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.64 | 50.0 | 4.61e-01 | 86.8% | 67.1% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 49.0 | 4.42e-01 | 84.9% | 72.0% |
| 1h72C02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.63 | 47.0 | 3.55e-01 | 83.0% | 43.7% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.62 | 49.0 | 3.71e-01 | 88.7% | 47.0% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.62 | 48.0 | 3.89e-01 | 88.7% | 70.6% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.60 | 44.0 | 4.23e-01 | 83.0% | 89.1% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.58 | 40.0 | 3.55e-01 | 75.5% | 57.3% |
| 1puzA00 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.56 | 41.0 | 3.69e-01 | 83.0% | 64.6% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 42.0 | 4.15e-01 | 86.8% | 93.0% |
| 3fgyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.36e-01 | 94.3% | 74.1% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3418415 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.81 | 62.0 | 6.03e-01 | 84.9% | 78.3% |
| 4460488 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.78 | 62.0 | 6.16e-01 | 86.8% | 85.5% |
| 3523432 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.77 | 68.0 | 5.47e-01 | 100.0% | 76.0% |
| 4504399 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.76 | 68.0 | 5.90e-01 | 100.0% | 96.2% |
| 3840713 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.75 | 67.0 | 5.62e-01 | 100.0% | 92.2% |
| 3616797 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.75 | 67.0 | 5.67e-01 | 100.0% | 87.1% |
| 4181278 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.72 | 57.0 | 5.10e-01 | 86.8% | 77.3% |
| 4077186 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.72 | 56.0 | 4.84e-01 | 86.8% | 68.2% |
| 3889216 | 509.1.1.3 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N | 0.72 | 61.0 | 5.52e-01 | 98.1% | 98.7% |
| 5066226 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.71 | 54.0 | 5.09e-01 | 83.0% | 73.8% |
| 4953842 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.70 | 56.0 | 4.34e-01 | 86.8% | 50.4% |
| 5049087 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.68 | 44.0 | 4.60e-01 | 71.7% | 77.8% |
| 4981749 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.67 | 55.0 | 5.34e-01 | 92.5% | 95.0% |
| 3751836 | 3134.1.1.1 ↗ | a+b two layers › N-terminal domain of DC-UbP › N-terminal domain of DC-UbP › N-terminal domain of DC-UbP › UBD | 0.67 | 51.0 | 4.41e-01 | 84.9% | 74.1% |
| 4447444 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.66 | 56.0 | 3.30e-01 | 100.0% | 24.7% |
| 3283536 | 3694.1.1.2 ↗ | alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › Tricorn_C1 | 0.62 | 52.0 | 4.76e-01 | 100.0% | 100.0% |
| 3706647 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.62 | 47.0 | 3.47e-01 | 86.8% | 31.4% |
| 5055046 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.59 | 48.0 | 4.62e-01 | 90.6% | 86.7% |
| 3655716 | 544.1.1.1 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Prp18 | 0.58 | 45.0 | 3.72e-01 | 90.6% | 43.6% |