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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00445

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00445

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-56
PDB
Domain cluster: rep: PH2015_14_scaffold_1_prodigal-single.1__X__X__00011__D8-54
D2 high residues 296-349
PDB
Domain cluster: rep: IMGVR_UViG_3300038673_000745-3300038673-Ga0416707_000196_74481_75365__D180-235
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.63 47.0 3.38e-01 87.0% 95.2%
2k2sB00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.57 34.0 3.42e-01 70.4% 54.5%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 2.86e-01 94.4% 97.1%
2b0uD02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 34.0 3.25e-01 87.0% 48.6%
7pi0S01 1.10.3460.10 Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain 0.53 37.0 2.73e-01 79.6% 29.8%
1q25A01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 36.0 2.88e-01 74.1% 68.0%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 35.0 2.70e-01 74.1% 70.9%
3c4nA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.51e-01 77.8% 45.3%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.05e-01 81.5% 61.8%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.72e-01 90.7% 50.2%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 32.0 3.11e-01 90.7% 53.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3635090 109.26.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.63 33.0 2.09e-01 74.1% 9.1%
3838234 101.1.2.647 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30179 0.56 41.0 2.99e-01 77.8% 77.9%
None — 0.55 39.0 2.63e-01 81.5% 49.2%
3289939 2003.1.2.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 41.0 2.76e-01 90.7% 46.4%
3460106 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.52 40.0 2.79e-01 90.7% 95.9%
3864706 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 36.0 2.10e-01 75.9% 13.8%
3174145 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 37.0 2.24e-01 81.5% 52.0%
3729790 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.67e-01 85.2% 39.0%
4486951 316.1.1.54 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RlaP 0.51 38.0 3.08e-01 94.4% 95.7%