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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00464

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00464

Identity

Kingdom:
phage

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03462.24 best PCRF 32.1 1.40e-07 86.3% 17.0%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 42.0 3.41e-01 96.1% 29.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 47.0 4.21e-01 98.0% 52.1%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.68 53.0 3.05e-01 84.3% 89.2%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 45.0 4.92e-01 100.0% 89.7%
3h95A02 4.10.80.100 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.66 39.0 4.41e-01 98.0% 96.7%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.66 37.0 2.63e-01 80.4% 17.2%
3ksrA01 6.20.370.100 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.65 35.0 4.12e-01 74.5% 100.0%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.64 53.0 3.60e-01 100.0% 68.7%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 52.0 3.72e-01 100.0% 82.6%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 47.0 3.20e-01 84.3% 88.8%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 3.35e-01 72.5% 69.2%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 3.74e-01 100.0% 45.1%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 43.0 3.24e-01 80.4% 80.0%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.60 53.0 4.68e-01 100.0% 68.0%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.59 53.0 3.57e-01 100.0% 87.1%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.59 34.0 3.42e-01 78.4% 49.0%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 38.0 3.62e-01 92.2% 53.8%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 51.0 3.40e-01 98.0% 28.9%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.04e-01 90.2% 25.3%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.58 50.0 3.86e-01 100.0% 42.9%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 46.0 3.00e-01 92.2% 30.9%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 3.88e-01 98.0% 67.3%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 47.0 2.84e-01 88.2% 20.1%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.58e-01 100.0% 50.3%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.57 46.0 3.18e-01 92.2% 46.8%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 3.90e-01 100.0% 68.0%
3kxwA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 46.0 3.45e-01 90.2% 58.9%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 41.0 3.18e-01 84.3% 68.7%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 45.0 3.31e-01 98.0% 40.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 3.47e-01 100.0% 45.1%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.55 47.0 3.69e-01 100.0% 73.7%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 2.80e-01 88.2% 70.2%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.00e-01 98.0% 33.6%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.54 36.0 2.13e-01 70.6% 17.5%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 45.0 2.99e-01 100.0% 51.9%
1iicA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.12e-01 100.0% 28.3%
4my0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.27e-01 100.0% 34.3%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 45.0 3.25e-01 92.2% 41.0%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.28e-01 98.0% 43.8%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.76e-01 100.0% 24.1%
4hqnA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.52 43.0 3.98e-01 92.2% 80.0%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 39.0 3.32e-01 88.2% 48.9%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.42e-01 98.0% 20.1%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.51 37.0 3.59e-01 98.0% 68.3%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 42.0 3.08e-01 94.1% 43.8%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 37.0 2.56e-01 84.3% 39.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028299 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 40.0 3.27e-01 70.6% 30.5%
3503534 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.68 53.0 3.77e-01 82.4% 57.2%
4304389 5086.1.1.119 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C 0.67 51.0 3.34e-01 82.4% 88.6%
4985406 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.66 52.0 4.45e-01 92.2% 54.4%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.66 52.0 4.01e-01 86.3% 79.1%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 3.01e-01 100.0% 20.6%
4954852 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 56.0 3.84e-01 96.1% 66.5%
4539730 7558.1.1.0 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.63 54.0 3.63e-01 100.0% 70.0%
3357805 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.63 55.0 4.85e-01 98.0% 81.3%
3480610 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 49.0 4.43e-01 86.3% 94.3%
1153578 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.62 52.0 4.81e-01 100.0% 75.7%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.62 50.0 3.36e-01 90.2% 44.0%
5045252 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.62 54.0 4.27e-01 96.1% 92.0%
4933528 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.61 50.0 3.28e-01 88.2% 69.5%
4980707 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 3.72e-01 100.0% 41.0%
5056727 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.60 49.0 3.22e-01 88.2% 65.4%
4183868 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.60 49.0 4.22e-01 90.2% 100.0%
3236416 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.59 47.0 2.80e-01 86.3% 12.5%
4344712 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.59 47.0 3.80e-01 88.2% 66.0%
5050213 192.2.1.87 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.59 49.0 3.25e-01 88.2% 71.1%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.59 52.0 4.28e-01 100.0% 55.6%
4886985 7523.1.1.16 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP 0.59 42.0 3.34e-01 82.4% 58.4%
3929189 2484.1.1.272 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF30715 0.59 50.0 3.42e-01 100.0% 42.6%
2755266 3709.1.1.1 a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB 0.58 34.0 3.79e-01 100.0% 76.3%
5000798 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.58 53.0 3.53e-01 100.0% 31.9%
3937747 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 50.0 3.15e-01 98.0% 28.3%
10062 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.58 46.0 2.97e-01 88.2% 52.8%
4945700 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.12e-01 80.4% 86.7%
3491344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 35.0 2.97e-01 76.5% 32.1%
3994958 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.58 43.0 3.26e-01 84.3% 71.9%
3593809 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.58 44.0 3.54e-01 86.3% 98.2%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.57 44.0 3.72e-01 88.2% 87.2%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.57 43.0 3.66e-01 88.2% 49.4%
3890772 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.57 46.0 4.00e-01 98.0% 58.7%
4953602 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.57 40.0 3.65e-01 74.5% 74.3%
5026457 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.57 49.0 3.16e-01 92.2% 87.0%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 49.0 3.42e-01 94.1% 32.3%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.56 45.0 2.88e-01 98.0% 23.4%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 46.0 4.31e-01 96.1% 92.3%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.54 46.0 3.83e-01 98.0% 55.3%
3549847 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.54 43.0 2.64e-01 98.0% 13.1%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.54 46.0 4.00e-01 98.0% 62.7%
3788129 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.54 46.0 4.06e-01 94.1% 86.7%
3952151 327.5.1.6 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like 0.54 44.0 3.32e-01 90.2% 54.0%
5005640 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.53 42.0 3.90e-01 92.2% 67.7%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.53 46.0 4.00e-01 100.0% 64.0%
3271786 193.1.1.0 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.53 48.0 3.29e-01 100.0% 48.8%
4047331 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.53 38.0 3.18e-01 78.4% 79.0%
5032125 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 2.91e-01 98.0% 33.1%
3993949 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 34.0 3.56e-01 94.1% 75.6%
4980688 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.52 46.0 3.82e-01 100.0% 82.2%
5041611 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.52 44.0 3.00e-01 94.1% 29.7%
3510702 2004.1.1.107 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.52 47.0 2.98e-01 100.0% 20.8%
3238923 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.52 42.0 2.48e-01 100.0% 27.7%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.52 43.0 3.83e-01 94.1% 86.7%
3266052 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 42.0 3.05e-01 92.2% 65.5%
4001707 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 46.0 3.82e-01 98.0% 92.9%
3963812 3170.1.1.0 a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 0.51 36.0 2.95e-01 84.3% 36.4%
5047754 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.51 35.0 3.07e-01 76.5% 84.4%
3706357 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.51 46.0 2.96e-01 100.0% 65.3%
3480623 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.50 42.0 3.68e-01 94.1% 84.8%