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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00495

Bact-Vir

ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00495

Identity

Kingdom:
phage

Quality

65.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-129
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 44.0 4.26e-01 73.1% 87.8%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 47.0 4.43e-01 84.3% 97.7%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.55 39.0 4.28e-01 85.2% 88.9%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.55 50.0 4.60e-01 100.0% 96.4%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.47e-01 74.1% 66.2%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 40.0 3.82e-01 77.8% 97.7%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 37.0 2.93e-01 71.3% 68.8%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 4.10e-01 86.1% 96.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.53 33.0 3.52e-01 96.3% 71.3%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.91e-01 87.0% 86.8%
1q7lA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 40.0 3.37e-01 83.3% 64.6%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 3.03e-01 75.0% 45.8%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 40.0 4.01e-01 84.3% 93.8%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.21e-01 100.0% 76.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940149 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.75 54.0 5.85e-01 75.0% 96.7%
3698492 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.69 52.0 4.98e-01 78.7% 93.6%
3936785 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.62 44.0 4.46e-01 73.1% 87.6%
3439467 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.61 44.0 4.22e-01 76.9% 96.2%
3479101 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.61 43.0 4.20e-01 74.1% 96.7%
3177293 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.59 45.0 4.29e-01 80.6% 99.2%
184861 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.59 41.0 3.41e-01 72.2% 48.7%
3483689 241.6.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.58 50.0 4.44e-01 94.4% 93.5%
3786425 241.6.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.57 43.0 4.04e-01 77.8% 100.0%
3337688 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.57 44.0 4.16e-01 83.3% 97.8%
3954710 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.56 47.0 4.49e-01 88.9% 80.0%
4965849 3435.1.1.9 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 0.56 40.0 3.03e-01 73.1% 36.1%
3477584 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.55 42.0 3.15e-01 84.3% 99.0%
3228098 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 42.0 4.27e-01 96.3% 87.6%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.52 37.0 2.89e-01 72.2% 83.1%
4586501 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.52 40.0 2.66e-01 80.6% 90.9%
1954605 11.1.3.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu 0.52 39.0 3.85e-01 79.6% 97.3%
3475404 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.52 40.0 3.31e-01 82.4% 62.0%
1147343 243.1.1.38 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › BACOVA_00961-like 0.51 33.0 3.03e-01 75.0% 45.8%
140559 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.51 40.0 4.01e-01 84.3% 93.8%
3787121 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 46.0 4.35e-01 98.1% 87.2%
4020163 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.51 44.0 4.01e-01 98.1% 83.3%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 2.78e-01 86.1% 31.5%