←Back to structures
ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00521
Bact-VirALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00521
Identity
- Kingdom:
- phage
Quality
48.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-257
D2
high
residues 971-1111
D3
medium
residues 16-79_98-126
D4
medium
residues 774-853
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.56 | 39.0 | 3.57e-01 | 72.5% | 73.8% |
| 3fymA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 31.0 | 3.17e-01 | 76.2% | 54.9% |
| 2d2eA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.03e-01 | 92.5% | 55.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5019222 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.56 | 45.0 | 3.17e-01 | 87.5% | 66.0% |
| 3472708 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.53 | 37.0 | 2.89e-01 | 75.0% | 53.7% |
D5
medium
residues 854-947
Domain cluster:
rep: OQ680521.1__WGL39645.1__P05B_000005__00005__D68-137
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05257.23 best | CHAP | 28.9 | 1.90e-06 | 57.5% | 67.9% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.73 | 63.0 | 5.14e-01 | 92.6% | 56.1% |
| 2kdsA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 47.0 | 4.94e-01 | 83.0% | 74.4% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.69 | 57.0 | 4.70e-01 | 87.2% | 61.5% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 41.0 | 4.33e-01 | 74.5% | 68.6% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 5.14e-01 | 74.5% | 100.0% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.44e-01 | 79.8% | 80.2% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.60 | 45.0 | 4.95e-01 | 80.9% | 97.4% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 44.0 | 4.47e-01 | 80.9% | 90.2% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 4.41e-01 | 91.5% | 87.5% |
| 3h6zA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 3.89e-01 | 79.8% | 87.5% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 37.0 | 3.05e-01 | 76.6% | 94.5% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 38.0 | 3.64e-01 | 78.7% | 71.2% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 35.0 | 3.09e-01 | 70.2% | 48.3% |
| 2bvbA00 | 2.60.120.710 | Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 | 0.51 | 41.0 | 3.70e-01 | 90.4% | 91.2% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964422 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.82 | 72.0 | 5.87e-01 | 93.6% | 54.4% |
| 3782999 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.74 | 59.0 | 5.06e-01 | 84.0% | 86.2% |
| 1293874 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.71 | 62.0 | 5.05e-01 | 92.6% | 55.8% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 43.0 | 5.33e-01 | 74.5% | 100.0% |
| 4943151 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 47.0 | 4.85e-01 | 81.9% | 72.2% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.70 | 47.0 | 5.55e-01 | 78.7% | 100.0% |
| 4134531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 47.0 | 5.19e-01 | 78.7% | 87.8% |
| 3954254 | 4.1.1.387 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c | 0.69 | 45.0 | 5.31e-01 | 78.7% | 96.9% |
| 4559992 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.69 | 47.0 | 4.55e-01 | 83.0% | 63.1% |
| 2675860 | 4.1.1.15 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e | 0.68 | 46.0 | 4.29e-01 | 80.9% | 56.1% |
| 4255818 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 46.0 | 4.55e-01 | 81.9% | 65.0% |
| 3924760 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.12e-01 | 76.6% | 86.7% |
| 4168737 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 46.0 | 5.13e-01 | 70.2% | 97.3% |
| 4141828 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 46.0 | 5.08e-01 | 70.2% | 97.3% |
| 3252839 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 49.0 | 5.44e-01 | 78.7% | 96.0% |
| 4041376 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.67 | 49.0 | 5.27e-01 | 77.7% | 97.5% |
| 3631298 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 46.0 | 5.09e-01 | 71.3% | 97.3% |
| 5020252 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.66 | 50.0 | 4.64e-01 | 80.9% | 79.2% |
| 4903854 | 4.1.1.16 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e,Ribosomal_L6e_N | 0.66 | 47.0 | 3.84e-01 | 87.2% | 41.6% |
| 3723465 | 4.1.1.5 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e | 0.66 | 47.0 | 4.03e-01 | 83.0% | 47.6% |
| 4026408 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.66 | 46.0 | 4.55e-01 | 78.7% | 68.0% |
| 2721517 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 4.55e-01 | 81.9% | 69.4% |
| 3879755 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.65 | 45.0 | 4.39e-01 | 72.3% | 81.9% |
| 4990503 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.65 | 49.0 | 4.48e-01 | 80.9% | 77.6% |
| 4999430 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.62 | 50.0 | 4.66e-01 | 88.3% | 70.0% |
| 3416068 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.61 | 45.0 | 3.75e-01 | 75.5% | 77.4% |
| 3669492 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.61 | 46.0 | 4.08e-01 | 80.9% | 82.9% |
| 3258610 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 43.0 | 4.64e-01 | 79.8% | 88.7% |
| 3508441 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 48.0 | 4.79e-01 | 85.1% | 84.2% |
| 3482225 | 4.1.1.300 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C | 0.60 | 45.0 | 4.10e-01 | 80.9% | 87.7% |
| 3658643 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 46.0 | 3.95e-01 | 80.9% | 89.0% |
| 3673944 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.59 | 44.0 | 3.80e-01 | 79.8% | 79.9% |
| 3592541 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.65e-01 | 78.7% | 97.5% |
| 5013238 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 44.0 | 4.11e-01 | 80.9% | 93.3% |
| 3284911 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.58 | 41.0 | 3.55e-01 | 72.3% | 90.7% |
| 3596676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 44.0 | 4.53e-01 | 84.0% | 85.6% |
| 3609031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.74e-01 | 92.6% | 96.0% |
| 3624525 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.56 | 42.0 | 3.42e-01 | 79.8% | 52.2% |
| 3583485 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.56 | 42.0 | 4.06e-01 | 79.8% | 89.5% |
| 3866571 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.55 | 44.0 | 2.86e-01 | 87.2% | 66.3% |
| 3597379 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.80e-01 | 76.6% | 85.5% |
| 3950388 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.53 | 36.0 | 3.12e-01 | 70.2% | 45.9% |
| 3171382 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.52 | 38.0 | 3.93e-01 | 77.7% | 95.6% |
| 4999024 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 36.0 | 2.88e-01 | 71.3% | 35.8% |
| 3801890 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 41.0 | 3.24e-01 | 85.1% | 92.5% |
| 3470912 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 39.0 | 3.63e-01 | 81.9% | 92.5% |
| 3538619 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 39.0 | 3.50e-01 | 80.9% | 77.7% |
| 3996280 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.51 | 38.0 | 3.66e-01 | 79.8% | 90.0% |
| 3178261 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 38.0 | 3.51e-01 | 79.8% | 78.4% |
| 4203220 | 10.1.1.26 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C | 0.51 | 40.0 | 3.33e-01 | 87.2% | 87.8% |
| 3740122 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.51 | 39.0 | 3.52e-01 | 83.0% | 84.2% |
| 3917645 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 38.0 | 3.52e-01 | 79.8% | 90.0% |
| 3936730 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 37.0 | 3.59e-01 | 79.8% | 88.2% |
| 3899590 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 37.0 | 3.24e-01 | 80.9% | 66.5% |